Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865479:139865499:[+] chr7:23224842:23224863:[+] nonBSJ supported CDS

circRNA 5':CCGGACAAUCCAU-GUCUUCCA 3'


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target  3':AGUCUGUUAGGUUUCGGAAGGA 5'

 -29.40 1 RIC-seq
chrX:139865479:139865514:[+] chr7:23224816:23224863:[+] nonBSJ supported CDS

circRNA 5':CCGGACAAUCCAU-GUCUUCCAA----------GAAGCUCCA-AGUCU 3'


            |:||||||||| |:||||| ||||||||| |:||


target  3':AGUCUGUUAGGUUUCGGAAGGAAGGACAAUCAACUUCGAGGUCUUAGU 5'

 -43.40 16 RIC-seq
chrX:139865482:139865514:[+] chr7:23224816:23224861:[+] nonBSJ supported CDS

circRNA 5': GACAAUCCAU-GUCUUCCAA----------GAAGCUCCA-AGUCU 3'


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target  3':UCUGUUAGGUUUCGGAAGGAAGGACAAUCAACUUCGAGGUCUUAGU 5'

 -39.60 2 RIC-seq