Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866009:139866055:[+] chr7:29961635:29961685:[-] nonBSJ supported 3UTR

circRNA 5': GUCUUCCAGAAAAUC-CACG-UCUUCCCAACAAUCCAAGUCUUCC--GGAU 3'


            ||| ||| ||:| ||| ||::||| | ||| :||:


target  3':GCAGUAGGAGC-UUGGAGUGAAAGGGGGGGGGAAUUG-UCACUAUCUUUCUGU 5'

 -25.80 1 RIC-seq
chrX:139866015:139866052:[+] chr7:29961623:29961662:[-] nonBSJ supported 3UTR

circRNA 5':CAGAAAAUCC-ACGUCUUCC-C-AACAAUCCAAGUCUUCCG 3'


            ||| || ||||| ||| | ||| || ||::||


target  3':CUCUCAAUGGAUGCAGUAGGAGCUUGG-AGUGAAAGGGGGG 5'

 -24.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:29961623:29961662:[-] target - chr7:29961659-29961660 C>G LAML-KR ICGC
chr7:29961635:29961685:[-] target - chr7:29961659-29961660 C>G LAML-KR ICGC