Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865775:139865792:[+] chr13:48833004:48833022:[+] nonBSJ supported CDS

circRNA 5': AAGAAAUCCAGGUCUUCC 3'


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target  3':UUUCUUUGGGUCCACUAGU 5'

 -20.10 21 RIC-seq
chrX:139865776:139865792:[+] chr13:48833004:48833021:[+] nonBSJ supported CDS

circRNA 5': AGAAAUCCAGGUCUUCC 3'


            |||||:|||||| ||


target  3':UUCUUUGGGUCCACUAGU 5'

 -19.20 1 RIC-seq
chrX:139866292:139866325:[+] chr13:48833027:48833049:[+] nonBSJ supported CDS

circRNA 5':AUCCUUGUCUUCCCUCAAAUCCAUAGCUUCCGAA 3'


            |||||||| ||:|| |||


target  3':AAGGAACAGUACU--------GUGUCA---GCUA 5'

 -14.10 20 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866292:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC