Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866386:139866421:[+] chr13:51484198:51484227:[+] nonBSJ supported CDS

circRNA 5': AUGUCUU---CCAUCAAAUUAAUGUCUUCCAGCCUACUU 3'


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target  3':GUGCGGUCGCCGGU---------ACGGCGGG-CGGA-GAAG 5'

 -18.00 5 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:51484198:51484227:[+] target 3576266 chr13:51484208-51484209 GCGGCATGG>ACC Aicardi-Goutieres_syndrome_2 ClinVar
chr13:51484198:51484227:[+] target 661979 chr13:51484214-51484215 T>C Aicardi-Goutieres_syndrome_2 ClinVar
chr13:51484198:51484227:[+] target 1451439 chr13:51484214-51484215 TG>T Aicardi-Goutieres_syndrome_2 ClinVar