Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866580:139866595:[+] chr12:106641151:106641167:[-] nonBSJ supported CDS

circRNA 5':AGCU--ACGUCUUCCAAC 3'


            ||| |||:|:| |||


target  3':ACGAGCUGCGGGACGUU 5'

 -12.20 1 RIC-seq
chrX:139866652:139866665:[+] chr12:106641151:106641163:[-] nonBSJ supported CDS

circRNA 5':CUGCUCGUCUUCCA 3'


            |||||| | :||


target  3': ACGAGCUGCGGGA 5'

 -13.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866580:139866595:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC