Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866154:139866194:[+] chr2:109086232:109086259:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGCUU 3'


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target  3':AAGAAGGUCGACGAA-AACAUUCA-----------AUCGA 5'

 -14.30 14 RIC-seq
chrX:139866261:139866296:[+] chr2:109086885:109086931:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCC-----------AGACU-AUCCAUGUCUUCCAGAAAAUCCU 3'


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target  3': CAGAAGGGCAAGUACUUUUUUGAGUAGGAAAUAUACAACUCGUAGGU 5'

 -19.70 1 RIC-seq
chrX:139866261:139866316:[+] chr2:109086883:109086931:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUA 3'


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target  3': CAGAAGGGCAA----GUACUUUUUUGAG--UAGGAAAUAUACAACUCGUAGGUAA 5'

 -24.00 10 RIC-seq
chrX:139866349:139866394:[+] chr2:109086224:109086262:[+] nonBSJ supported CDS

circRNA 5':CGUGUCUUCCAGCAAAUCCACGUCUUCCAACAA-AGCCAUGUCUUCC 3'


            |: ||||||||| |: ||| |||||||


target  3':ACGAAGAAGGUCGA-------CGAAAACAUUCAAUCGAAACAGAAG 5'

 -25.00 1 RIC-seq
chrX:139866349:139866395:[+] chr2:109086221:109086262:[+] nonBSJ supported CDS

circRNA 5':CGUGUCUUCCAGCAAAUCCACGUCUUCCAACAA-AGCCAUGUCUUC-CA 3'


            |: ||||||||| |: ||| ||||||| |


target  3':ACGAAGAAGGUCGA-------CGAAAACAUUCAAUCGAAACAGAAGUGA 5'

 -25.20 31 RIC-seq
chrX:139866349:139866395:[+] chr2:109086222:109086262:[+] nonBSJ supported CDS

circRNA 5':CGUGUCUUCCAGCAAAUCCACGUCUUCCAACAA-AGCCAUGUCUUC-CA 3'


            |: ||||||||| |: ||| ||||||| |


target  3':ACGAAGAAGGUCGA-------CGAAAACAUUCAAUCGAAACAGAAGUG 5'

 -25.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:109086221:109086262:[+] target - chr2:109086242-109086243 C>T PACA-CA ICGC
chr2:109086222:109086262:[+] target - chr2:109086242-109086243 C>T PACA-CA ICGC
chr2:109086224:109086262:[+] target - chr2:109086242-109086243 C>T PACA-CA ICGC
chr2:109086232:109086259:[+] target - chr2:109086242-109086243 C>T PACA-CA ICGC