Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866637:139866658:[+] chr2:100058856:100058871:[-] nonBSJ supported CDS

circRNA 5':CAGGGCUUCCAGCAUCUGCUCG 3'


            ||: ||| ||||| |


target  3':CUCUGGAA------AGACGUGU 5'

 -10.20 4 RIC-seq
chrX:139866683:139866751:[+] chr2:100058807:100058871:[-] nonBSJ supported CDS

circRNA 5':AGCAUC--UCUGUGUCUUCCAGCAUCUUCAUGUCUUCCAACAACUACCCAGUCUUCCAUCAACUGGCUCAA 3'


            || :||| |: || |||:||| |||| | ||| || || |:| || ||


target  3':ACGAACCUGGAC-CGUC---UCCUAGGAGUCCAGACGUAUGUCCUAAUUUC-GACUCUGGAAAGACGUGU 5'

 -20.30 20 RIC-seq
chrX:139866332:139866345:[+] chr2:100019616:100019625:[-] nonBSJ supported Intron

circRNA 5':AGGUCUUCCAGGAA 3'


            ||||| |||


target  3':AUCAGA----CCUA 5'

 -7.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:100058807:100058871:[-] target - chr2:100058839-100058840 C>T BTCA-JP ICGC