Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865876:139865892:[+] chr2:231685742:231685755:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGUCAA 3'


            |||| ||||:||


target  3':UGUCCC---GGUCGGUC 5'

 -14.70 7 RIC-seq
chrX:139865900:139865930:[+] chr2:231685742:231685783:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAA--------------AAAAUCCAGGUCUUCCAGCCAA 3'


            ||||::|| ||| |||| |||||||


target  3':AGAGGUUUUAAAAUAAAAUUAAAUUUAAUGUCCC---GGUCGGUC 5'

 -20.10 7 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865900:139865930:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC