Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866126:139866143:[+] chr2:225714290:225714309:[-] nonBSJ supported CDS

circRNA 5':UGG-CCUCCAGGUCUUCCA 3'


            || ||||||||| |||||


target  3':CCCGGGAGGUCCAAAAGGUA 5'

 -27.00 1 RIC-seq
chrX:139866126:139866144:[+] chr2:225714290:225714309:[-] nonBSJ supported CDS

circRNA 5':UGG-CCUCCAGGUCUUCCAG 3'


            || ||||||||| |||||


target  3':CCCGGGAGGUCCAAAAGGUA 5'

 -27.50 30 RIC-seq
chrX:139866684:139866715:[+] chr2:225751177:225751203:[-] nonBSJ supported CDS

circRNA 5':GCAUCUCUGUGUCUUCCAGCAUCUUCAU-GUCU 3'


            ||||: |:| |||||||||||| |||


target  3':AGUAGGAAUA------GUCGUAGAAGUACCAGU 5'

 -26.40 26 RIC-seq