Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866286:139866335:[+] chr12:55343766:55343821:[-] nonBSJ supported 3UTR

circRNA 5':CAGAAAAUC-CUUGUCUUCCCUCAA----AUCCAU-AGCUUCCGAAAAAUCCA-GGU 3'


            |||||| |||||| |||| || |||| || :||| :|| ||:


target  3':AUCUUUUUUUGAACAG--GGGAUUUGAACUAGGACUUCAGAGGAUUGACGGGAACCGU 5'

 -27.00 1 RIC-seq
chrX:139866287:139866362:[+] chr12:55343766:55343820:[-] nonBSJ supported 3UTR

circRNA 5': AGAAAAUC-CUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCC--AGGUCUUCCAGGAAAUCCGUGUCUUCCAGCA 3'


            |||||| |||||| |||| |||: |||| |:||||:| ||:|:| ||


target  3':AUCUUUUUUUGAACAG--GGGA-UUUGAAC-------------UAGGACUUCAGAGGAUUG-------ACGGGAAC-CG 5'

 -29.70 2 RIC-seq
chrX:139866287:139866363:[+] chr12:55343766:55343821:[-] nonBSJ supported 3UTR

circRNA 5': AGAAAAUC-CUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCC--AGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAA 3'


            |||||| |||||| |||| |||: |||| |:||||:| ||:|:| |||


target  3':AUCUUUUUUUGAACAG--GGGA-UUUGAAC-------------UAGGACUUCAGAGGAUUG-------ACGGGAAC-CGU 5'

 -30.40 16 RIC-seq
chrX:139866288:139866363:[+] chr12:55343767:55343821:[-] nonBSJ supported 3UTR

circRNA 5': GAAAAUC-CUUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCC--AGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAA 3'


            ||||| |||||| |||| |||: |||| |:||||:| ||:|:| |||


target  3':UCUUUUUUUGAACAG--GGGA-UUUGAAC-------------UAGGACUUCAGAGGAUUG-------ACGGGAAC-CGU 5'

 -29.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866286:139866335:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866287:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866287:139866363:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866288:139866363:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC