5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866191:139866218:[+] | chr12:56122112:56122141:[-] | nonBSJ supported | 5UTR |
circRNA 5':GCUUCCAAAAA-AU-----CCGGGUCUUCCAGGA 3' |||||| || |||||:|| || target 3':GGAAGGUGGCGGUACCGACGGCCCGGA----CCC 5' |
-21.20 | 1 | RIC-seq |
| chrX:139866213:139866261:[+] | chr12:56122086:56122124:[-] | nonBSJ supported | CDS |
circRNA 5':CCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAA-CAAAGCCAU 3' ||:||| |||| :|| || ||:||| || |||| target 3':CGUUCUU--------GAAGUGUGUAAAGUA--AGGAGGAAGGUGGCGGU 5' |
-25.20 | 3 | RIC-seq |
| chrX:139866213:139866262:[+] | chr12:56122086:56122125:[-] | nonBSJ supported | CDS |
circRNA 5':CCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAA-CAAAGCCAUG 3' ||:||| |||| :|| || ||:||| || ||||| target 3':CGUUCUU--------GAAGUGUGUAAAGUA--AGGAGGAAGGUGGCGGUA 5' |
-26.40 | 14 | RIC-seq |
| chrX:139866213:139866274:[+] | chr12:56122086:56122138:[-] | nonBSJ supported | CDS |
circRNA 5':CCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAA-CAAAGCCAUGUCUUCCAGACUA 3' ||:||| |||| :|| || ||:||| || |||||| || || | |: target 3':CGUUCUU--------GAAGUGUGUAAAGUA--AGGAGGAAGGUGGCGGUACCGACGGCCCGGA 5' |
-33.60 | 15 | RIC-seq |