Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865551:139865566:[+] chr6:86321178:86321190:[-] nonBSJ supported 3UTR

circRNA 5':CAGCAAUUACUGGUCU 3'


            ||| |||:|||


target  3':UUCGA----GACUAGAA 5'

 -8.50 2 RIC-seq
chrX:139866485:139866512:[+] chr6:86321708:86321744:[-] nonBSJ supported 3UTR

circRNA 5':AACAAAGGU-ACGUCUU-CCAGAAA-------AUCCA 3'


            |||||:|| ||:|||| | |:| |||||


target  3': UGUUUUCAUUGUAGAACGAUUUGAUAAUAUGUAGGUU 5'

 -17.30 1 RIC-seq
chrX:139866485:139866513:[+] chr6:86321708:86321744:[-] nonBSJ supported 3UTR

circRNA 5':AACAAAGGU-ACGUCUU-CCAGAAA-------AUCCAC 3'


            |||||:|| ||:|||| | |:| |||||


target  3': UGUUUUCAUUGUAGAACGAUUUGAUAAUAUGUAGGUU 5'

 -17.80 1 RIC-seq
chrX:139866014:139866052:[+] chr6:86328599:86328640:[-] nonBSJ supported CDS

circRNA 5':CCAGAAAAUCCACG-------UCUUCCCAACAAUCCAAGUCUU--CCG 3'


            ||:||| |||:|| |||||||||| ||


target  3':CGUUUUUGUUAAAGUUAUAAAAGAGGG------AGGUUCAGAAACGGU 5'

 -21.90 2 RIC-seq