Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865672:139865697:[+] chr6:84896281:84896319:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCC-------------AGAAAAAUCUGUGUCUUC 3'


            |||||| |:|||| || || ||||


target  3':GUAGAAGUCCCCAUUUCUCGAUUUUUUAAGUCAAAGAAA 5'

 -9.40 1 RIC-seq
chrX:139865709:139865752:[+] chr6:84896281:84896319:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCCA--GUAAAUCUAGUUCUUCCAGAAAAAUCUAGA-UCUUC 3'


            |||||| ||||| ||:| :|||||| :|| ||||


target  3':GUAGAAGUCCCCAUUUC--UCGA------UUUUUUAAGUCAAAGAAA 5'

 -13.10 1 RIC-seq
chrX:139865709:139865769:[+] chr6:84896281:84896317:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCCA--GUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUU 3'


            |||||| ||||| ||:| :|||||| ||||| |||


target  3':GUAGAAGUCCCCAUUUC--UCGA------UUUUUUA-----------------AGUCAAAGA 5'

 -13.80 1 RIC-seq
chrX:139865709:139865770:[+] chr6:84896281:84896318:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCCA--GUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUC 3'


            |||||| ||||| ||:| :|||||| ||||| ||||


target  3':GUAGAAGUCCCCAUUUC--UCGA------UUUUUUA-----------------AGUCAAAGAA 5'

 -14.70 3 RIC-seq
chrX:139865709:139865770:[+] chr6:84896281:84896319:[-] nonBSJ supported CDS

circRNA 5':AGUCUUCCA--GUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUC 3'


            |||||| ||||| ||:| :|||||| ||||| ||||


target  3':GUAGAAGUCCCCAUUUC--UCGA------UUUUUUA-----------------AGUCAAAGAAA 5'

 -15.30 12 RIC-seq