5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139866629:139866647:[+] | chr9:86278917:86278934:[-] | nonBSJ supported | CDS |
circRNA 5': AGCAUCUCCAGGGCUUCCA 3' ||| |||||| |||||| target 3':CUCG--GAGGUCACGAAGGA 5' |
-23.30 | 2 | RIC-seq |
| chrX:139866742:139866802:[+] | chr9:86279945:86280011:[-] | nonBSJ supported | CDS |
circRNA 5':ACUGGCUCAAUAUCCAUGUCUUCC------AACGUCUCC--AGUGUGCUG-AUCUUCUGACAUUCAGGUC 3' |||| :|| | ||||| || |||| | : ||||| |||| |:||| |||:| target 3':GGACCCUACUCCGGGCCCCGAAGGCAACGAUUACAGACAUUUGGGACGACUUAGAC-AUUGU---UCCGGA 5' |
-33.20 | 1 | RIC-seq |
| chrX:139866744:139866757:[+] | chr9:86279954:86279969:[-] | nonBSJ supported | CDS |
circRNA 5':UGGCUCAAUA--UCCA 3' |||:| ||| target 3':UCCGGGCCCCGAAGGC 5' |
-10.20 | 1 | RIC-seq |
| chrX:139866785:139866826:[+] | chr9:86279964:86280025:[-] | nonBSJ supported | CDS |
circRNA 5':UCUUCUGACAUUCAGGUCU-----UCCAGU---------------GUCUGCAAUA-UCCAGGU 3' ||||:| |||| :|| |: |:||||| || ||| target 3': GAAGGCAACGAUUACAGACAUUUGGGACGACUUAGACAUUGUUCCGGACGUAACGAGAUCCC 5' |
-23.10 | 1 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chrX:139866742:139866802:[+] | circRNA | - | chrX:139866793-139866794 | C>T | LICA-CN | ICGC |
| chrX:139866785:139866826:[+] | circRNA | - | chrX:139866793-139866794 | C>T | LICA-CN | ICGC |
| chrX:139866785:139866826:[+] | circRNA | - | chrX:139866793-139866794 | C>T | LICA-CN | ICGC |