Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866408:139866443:[+] chr5:112179992:112180030:[+] nonBSJ supported 3UTR

circRNA 5':CUUCC-AGCCUACUU--GUGUCUUCCAACAAAGGUACGU 3'


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target  3':AAAGGAUUGGUAGUUCUCACGGAGGGUUUUAUUCUGGUC 5'

 -27.00 1 RIC-seq
chrX:139866039:139866079:[+] chr5:112174486:112174533:[+] nonBSJ supported CDS

circRNA 5':AUCCAAGUCUU--CCGGAUAAUUUGGGUC----UUCC-UGAAAAUCUA 3'


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target  3':GAGAGUCAUAUUUGUCCUAUUCAACAUGAAACUAAGGAACUAACAGAA 5'

 -14.20 2 RIC-seq
chrX:139866414:139866438:[+] chr5:112174103:112174129:[+] nonBSJ supported CDS

circRNA 5': G-CCUACUUGUGUCUUCCAACAAAGG 3'


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target  3':ACAGGAUAAACUUAAAAGGCUGAAUCA 5'

 -13.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:112174103:112174129:[+] target 821844 chr5:112174105-112174106 TAA>T Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112174103:112174129:[+] target 952619 chr5:112174106-112174107 A>T Familial_adenomatous_polyposis_1 ClinVar
chr5:112174103:112174129:[+] target 433635 chr5:112174109-112174110 TC>T Familial_multiple_polyposis_syndrome ClinVar
chr5:112174103:112174129:[+] target 492659 chr5:112174112-112174113 GA>G Familial_adenomatous_polyposis_1|not_provided ClinVar
chr5:112174103:112174129:[+] target 2584055 chr5:112174112-112174113 G>T Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1 ClinVar
chr5:112174103:112174129:[+] target 559961 chr5:112174119-112174120 C>A Classic_or_attenuated_familial_adenomatous_polyposis|Familial_multiple_polyposis_syndrome ClinVar
chr5:112174103:112174129:[+] target 821863 chr5:112174119-112174120 C>G Familial_adenomatous_polyposis_1|Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112174103:112174129:[+] target 469776 chr5:112174127-112174128 AC>A Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 1728723 chr5:112174487-112174488 A>AG Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 2584012 chr5:112174488-112174489 GAC>G Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 88914 chr5:112174489-112174490 ACAAT>A Hereditary_cancer-predisposing_syndrome|Carcinoma_of_colon|Familial_multiple_polyposis_syndrome|not_provided|Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 2584008 chr5:112174490-112174491 CAATCAAGG>C Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 2584148 chr5:112174490-112174491 C>GTCT Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 803 chr5:112174490-112174491 C>T Gastric_cancer|Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 579696 chr5:112174494-112174495 C>A Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 490258 chr5:112174494-112174495 C>G Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 2033800 chr5:112174498-112174499 G>GA Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 642587 chr5:112174501-112174502 TCA>T Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 232078 chr5:112174502-112174503 C>T Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1|not_provided ClinVar
chr5:112174486:112174533:[+] target 2583902 chr5:112174506-112174507 G>GTA Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 3881062 chr5:112174506-112174507 GTACAACT>G Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112174486:112174533:[+] target 1456716 chr5:112174512-112174513 CT>C Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 856077 chr5:112174514-112174515 TA>T Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 2583738 chr5:112174515-112174516 AT>A Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 845025 chr5:112174516-112174517 T>A Familial_adenomatous_polyposis_1|Hereditary_cancer-predisposing_syndrome ClinVar
chr5:112174486:112174533:[+] target 3653284 chr5:112174520-112174521 GTT>G Familial_adenomatous_polyposis_1 ClinVar
chr5:112174486:112174533:[+] target 411476 chr5:112174528-112174529 TGA>T Hereditary_cancer-predisposing_syndrome|Familial_adenomatous_polyposis_1 ClinVar