Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865916:139865964:[+] chr13:111350286:111350323:[-] nonBSJ supported Exon

circRNA 5':AGGUCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUUCCAGAA 3'


            || |:|| :||| ||||| ||: || |:|| |||


target  3': CCUGGAGUGUGGU---------AAGGAAA-CUGAGUACGGAUUCUCUG 5'

 -24.00 10 RIC-seq
chrX:139865919:139865964:[+] chr13:111350288:111350323:[-] nonBSJ supported Exon

circRNA 5':UCUUCCAGCCAAUAUAUGUCUUCCUGAAGAUCCACGUCUUCCAGAA 3'


            |:|| :||| ||||| ||: || |:|| |||


target  3':UGGAGUGUGGU---------AAGGAAA-CUGAGUACGGAUUCUCUG 5'

 -20.60 2 RIC-seq
chrX:139865946:139865982:[+] chr13:111350287:111350323:[-] nonBSJ supported Exon

circRNA 5':AGAUC-CACGUC-UUCCAGAAAAUCCAUGUCUUCCAGAA 3'


            ||:| |||::| |||| |: ||||:|| |||


target  3': CUGGAGUGUGGUAAGGAAAC-UGAGUACGGAUUCUCUG 5'

 -21.60 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr13:111350286:111350323:[-] target - chr13:111350323-111350324 C>A BTCA-JP ICGC
chr13:111350287:111350323:[-] target - chr13:111350323-111350324 C>A BTCA-JP ICGC
chr13:111350288:111350323:[-] target - chr13:111350323-111350324 C>A BTCA-JP ICGC