Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865435:139865449:[+] chr13:96293965:96293978:[-] nonBSJ supported CDS

circRNA 5':CUGAGCUUCCAGAAA 3'


            |||:|| ||||


target  3': ACUUGACCUUCUUC 5'

 -7.70 1 RIC-seq
chrX:139865670:139865694:[+] chr13:96282324:96282354:[-] nonBSJ supported CDS

circRNA 5':CAUGUC-UUCCAGAAA-----AAUCUGUGUC 3'


            || || :||| || ||||||||:


target  3':CUAGAGUGAGGCCUCGAAGAGUUAGACACGU 5'

 -16.30 38 RIC-seq
chrX:139865672:139865694:[+] chr13:96282325:96282354:[-] nonBSJ supported CDS

circRNA 5': UGUC-UUCCAGAAA-----AAUCUGUGUC 3'


            | || :||| || ||||||||:


target  3':UAGAGUGAGGCCUCGAAGAGUUAGACACGU 5'

 -15.20 1 RIC-seq
chrX:139865860:139865878:[+] chr13:96237145:96237160:[-] nonBSJ supported CDS

circRNA 5':ACGUCUUCCACCAAAUCCA 3'


            |:||:||||| ||||


target  3':AGUAGGAGGUG---UAGGC 5'

 -19.50 1 RIC-seq