Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865876:139865907:[+] chr13:101184646:101184677:[-] nonBSJ supported CDS

circRNA 5': CCAGGUCUUCCAGUCAAU-CCACAUCUUCCGGA 3'


            || |:|:|||| || | ||||


target  3':UGGAGCGGGAGGUGCUCCGCGG-GGCUC-GGCCC 5'

 -22.60 23 RIC-seq
chrX:139865876:139865924:[+] chr13:101184584:101184611:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCCGGA-AAAAAUCCAGGUCUUCC 3'


            |||| |||| || || |:||| ||


target  3':UGUCCC---------------------GGCCCGUUGAGAGCUUCAGUAG 5'

 -15.30 1 RIC-seq
chrX:139865876:139865926:[+] chr13:101184584:101184613:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCCGGA-AAAAAUCCAGGUCUUCCAG 3'


            |||| |||| || || |:||| ||||


target  3':UGUCCC---------------------GGCCCGUUGAGAGCUUCAGUAGGU 5'

 -20.20 1 RIC-seq
chrX:139865876:139865927:[+] chr13:101184584:101184614:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCCGGA-AAAAAUCCAGGUCUUCCAGC 3'


            |||| |||| || || |:||| |||||


target  3':UGUCCC---------------------GGCCCGUUGAGAGCUUCAGUAGGUC 5'

 -22.40 25 RIC-seq
chrX:139865895:139865927:[+] chr13:101184583:101184614:[-] nonBSJ supported CDS

circRNA 5':CACAUCUUCCGGA-AAAAAUCCAGGUCUUCCAGC 3'


            ||| |||| || || |:||| |||||


target  3':AUGUCCC-GGCCCGUUGAGAGCUUCAGUAGGUC 5'

 -21.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865876:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865924:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865926:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865927:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865895:139865927:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC