Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866647:139866680:[+] chr4:56404829:56404887:[-] nonBSJ supported Intron

circRNA 5':AGCAUCU-GCUCGUCUUC----------------------CAACAUCU----CCACGUCUU 3'


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target  3': CGUAGGUCGAUCU-AAGUUUUUUGAGAUAUUUGUAUUUCGUUGUUUCUUUUGGUGUAGAC 5'

 -22.30 2 RIC-seq
chrX:139866650:139866680:[+] chr4:56404851:56404887:[-] nonBSJ supported Intron

circRNA 5':AUCUGCU--CGUCUUCCAACAUCU----CCACGUCUU 3'


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target  3':GAGAUAUUUGUAUUUCGUUGUUUCUUUUGGUGUAGAC 5'

 -16.10 2 RIC-seq