Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866405:139866415:[+] chr11:46879501:46879509:[-] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGC 3'


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target  3':UCAG-AGGUU 5'

 -8.40 10 RIC-seq
chrX:139866412:139866439:[+] chr11:46879421:46879443:[-] nonBSJ supported 3UTR

circRNA 5':CAGCCUACUUGUGUCUUCCAACAAAGGU 3'


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target  3': UCG--UGAACUCUUUC--UUGUAUCCU 5'

 -10.90 11 RIC-seq
chrX:139865607:139865626:[+] chr11:46900694:46900712:[-] nonBSJ supported CDS

circRNA 5':AGGAAAUCCAUGUCU-UCCAA 3'


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target  3':ACCUUCU-GUACCUACAGGU 5'

 -10.70 2 RIC-seq