Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865487:139865534:[+]	chr18:59973723:59973790:[+]	nonBSJ supported	3UTR	circRNA 5':UCC-AUGUCUUCC-----------------AAGAAG-CUCCAAGUCUUCCAGUAAAUCA-AGU-CUUCC 3' \|\| \|\|\|\|\|\|\| \|\|\| \|\| \|:\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\| target 3':CGGUUACAGAAAAAAUCAAAUCUCCCUUUUUUCAUCGGGGGUUCAC-AGGAAUUGAAAAGUCAUGAAGA 5'	-26.60	1	RIC-seq
chrX:139865510:139865552:[+]	chr18:59949545:59949584:[+]	nonBSJ supported	CDS	circRNA 5':AGUCUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGUCUUCCA 3' \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|:\| \| \|\|\| \|\| \|\|\|\| \| target 3':CUAGAAGGUCCUUUC-UUCGGUUGA-CGUAAAAGUGAGAAAG 5'	-26.20	1	RIC-seq
chrX:139865523:139865571:[+]	chr18:59949575:59949646:[+]	nonBSJ supported	CDS	circRNA 5':AUCAAGUCUUCCA----------------------GCAAAUCCA----GUCUUCCAGCAAUUACUG---GUCUUCCAC 3' \|\|\|\| \|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\| :\|\|\|\|\|\|\| target 3':CGGUUGAGAUGGUUUACAAAAAUACUAGAGACAUACGUUUCUUACAACCAGAACU------AUGACUCCUAGAAGGUC 5'	-25.20	1	RIC-seq
chrX:139865972:139865997:[+]	chr18:59928742:59928767:[+]	nonBSJ supported	CDS	circRNA 5':GUCUUCCAGAAAAUCCAUGU----CUUCCA 3' \|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| target 3':AAGUAGGUC----AGGUACAAGAGGAAGGA 5'	-22.90	2	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr18:59973723:59973790:[+]	target	-	chr18:59973776-59973777	A>G	EOPC-DE	ICGC