Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865494:139865538:[+] chr2:8928900:8928943:[-] nonBSJ supported CDS

circRNA 5':CUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUC-AAGUCUUC--CAGCA 3'


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target  3': AAGGUUGAGAGAGGAAGAGAAG--CAGGUGGUUUCAUUUACUGUUG 5'

 -25.30 2 RIC-seq
chrX:139865506:139865520:[+] chr2:8958824:8958837:[-] nonBSJ supported CDS

circRNA 5':UCCAAGUCUUCCAGU 3'


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target  3': GGUUUAGAAGGUCU 5'

 -20.30 3 RIC-seq
chrX:139865435:139865471:[+] chr2:8869914:8869954:[-] nonBSJ supported Intron

circRNA 5': CUGAGCUUCCAGAAAAUCCACA-UCUUCCAG-ACA-AUCC 3'


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target  3':UGACUGGAAAAACUACAUUAAUAAAGGAGUAAGUGAGUAGA 5'

 -11.90 2 RIC-seq
chrX:139865996:139866019:[+] chr2:8869967:8869997:[-] nonBSJ supported Intron

circRNA 5':CAGUAACCU-------CCCA-GUCUUCCAGAA 3'


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target  3':AUCA-UGGAUAAUAAUGGGUACAGAGGGACUA 5'

 -22.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:8958824:8958837:[-] target - chr2:8958822-8958826 TACC>- PACA-CA ICGC