Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866269:139866306:[+]	chr1:117529499:117529539:[+]	nonBSJ supported	CDS	circRNA 5':AGACUAUCCAUGUCUU------CCAGAAAAUCCUUGUCUU-CCCU 3' \|\|\|: \|\|\| \|\|\|\| \|\|\|\| :\|\|: \|\|\| target 3':CUUGG-AGGA--AGAAUGUUGUGGUCACCCUC-GACGUCAUGGGC 5'	-15.50	1	RIC-seq
chrX:139866316:139866361:[+]	chr1:117529489:117529539:[+]	nonBSJ supported	CDS	circRNA 5': AGCUUCCGAAA---AAU-CCAGGUCUUC---CAGGAAAUCCG-UGUCUUCCAGC 3' \|:\|:\|\|\| \|\|: \|\|\|\| \|\|\| \|:\|\|\| \|\| \|\|\| target 3':CUUGGAGGAAGAAUGUUGUGGUCACCCUCGACGUCA--UGGGCUACUCU--GUCC 5'	-20.00	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866316:139866361:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC