Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865623:139865669:[+] chr18:44683878:44683909:[-] nonBSJ supported CDS

circRNA 5':CCAAUAAUUUCAAGGUCU--UCCAUCAAAUACAGAUCUUCCAGCUAAUC 3'


           ||| :||||:| ||||| ||| |||||:||:


target  3':GGUGGUUAAGGGACCAGACAAGG----------------GGUCGGUUG 5'

 -28.30 17 RIC-seq
chrX:139865623:139865669:[+] chr18:44683878:44683910:[-] nonBSJ supported CDS

circRNA 5':CCAAUAAUUUCAAGGUCU--UCCAUCAAAUACAGAUCUUCCAGCUAAUC 3'


           ||| :||||:| ||||| ||| |||||:||:


target  3':GGUGGUUAAGGGACCAGACAAGG----------------GGUCGGUUGA 5'

 -28.90 1 RIC-seq