Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865617:139865671:[+] chr11:9771462:9771507:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUCCAGCUAAUCCA 3'


            ||||| |||| || ||||| || ||||| || ||


target  3': CAGAAAAAGAG-AAAGGUCAAGAAGAGAGAG-------AGAAGUUCAAGACGGA 5'

 -18.80 1 RIC-seq
chrX:139865617:139865671:[+] chr11:9771462:9771508:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAAUAAUUUCAAGGUCUUCCAUCAAAUACAGAUCUUCCAGCUAAUCCA 3'


            ||||| |||| || ||||| || ||||| || ||


target  3':CCAGAAAAAGAG-AAAGGUCAAGAAGAGAGAG-------AGAAGUUCAAGACGGA 5'

 -19.60 40 RIC-seq