Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865484:139865510:[+]	chr11:63517479:63517506:[+]	nonBSJ supported	CDS	circRNA 5':CAAUCCAUGUCUUC--CAAGAAGCUCCAA 3' \|\|:\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\| target 3':UUUGGGU-CAGAAGAAGUGUAGAGAGGUC 5'	-21.60	2	RIC-seq
chrX:139865780:139865818:[+]	chr11:63520082:63520116:[+]	nonBSJ supported	CDS	circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUCUU---CCAGAAAGAA 3' \|\| \|\|\| \|\|\|\|\|\|:\|\|\| :\|\|\|\| \|\|\|\|\|\|\|\|\| target 3':AAGUUCC------UCAGUUGGUC-UAGAAGAUGGUCUUUCUC 5'	-32.20	1	RIC-seq
chrX:139866783:139866806:[+]	chr11:63487927:63487964:[+]	nonBSJ supported	CDS	circRNA 5':GAUCUU---------------CUGACAUUCAGGUCUUCC 3' \|\|\|\|: \|\|\| \| \|\|\|\|\|\|\|:\|\| target 3':AUAGAGACCAAAGACAUUUCCGAC-GAUAGUCCAGGAGA 5'	-20.40	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866783:139866806:[+]	circRNA	-	chrX:139866793-139866794	C>T	LICA-CN	ICGC