Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866059:139866101:[+] chr1:24998722:24998758:[+] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCCUGAAA-AUCUAC--GUCUUCCAAAAAAGCCAUGUC 3'


            ||||:|||||| | |||| |:||| ||:|:


target  3': ACCCGGAAGGAGUAACUAGAGUCCCGGAAAA--------GUGCGU 5'

 -26.30 33 RIC-seq
chrX:139866059:139866108:[+] chr1:24998720:24998758:[+] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCCUGAAA-AUCUACGUCUUCCAAAAAAGCCAUGUCUUCCAGA 3'


            ||||:|||||| | |||| ||| || |||


target  3': ACCCGGAAGGAGUAACUAGAGUCC-----------CGGAAAAGUGCGUCC 5'

 -26.80 1 RIC-seq
chrX:139866059:139866123:[+] chr1:24998690:24998758:[+] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCCUGAAA-AUCUAC--GUCUUC-CAAAAAAGCCAUGUC-UUCCAGAAAAUCCAC---AUCUUCC 3'


            ||||:|||||| | |||| |:||| || || ||: ||| |:| ||| ||||||


target  3': ACCCGGAAGGAGUAACUAGAGUCCCGGAAAAGUGCG-UCC--ACGAAAAGAUUUAGUAGUUCCAAUAGAAGU 5'

 -32.70 2 RIC-seq
chrX:139866059:139866123:[+] chr1:24998691:24998758:[+] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCCUGAAA-AUCUAC--GUCUUC-CAAAAAAGCCAUGUC-UUCCAGAAAAUCCAC---AUCUUCC 3'


            ||||:|||||| | |||| |:||| || || ||: ||| |:| ||| ||||||


target  3': ACCCGGAAGGAGUAACUAGAGUCCCGGAAAAGUGCG-UCC--ACGAAAAGAUUUAGUAGUUCCAAUAGAAG 5'

 -32.70 1 RIC-seq
chrX:139866059:139866130:[+] chr1:24998688:24998758:[+] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCCUGAAA-AUCUAC--GUCUUC-CAAAAAAGCCAUGUC-UUCCAGAAAAUCCAC---AUCUUCCAAUGGCC 3'


            ||||:|||||| | |||| |:||| || || ||: ||| |:| ||| |||||| :||


target  3': ACCCGGAAGGAGUAACUAGAGUCCCGGAAAAGUGCG-UCC--ACGAAAAGAUUUAGUAGUUCCAAUAGAAG----UCG 5'

 -34.10 28 RIC-seq
chrX:139866061:139866130:[+] chr1:24998688:24998756:[+] nonBSJ supported CDS

circRNA 5':GGGUCUUCCUGAAA-AUCUAC--GUCUUC-CAAAAAAGCCAUGUC-UUCCAGAAAAUCCAC---AUCUUCCAAUGGCC 3'


            ||:|||||| | |||| |:||| || || ||: ||| |:| ||| |||||| :||


target  3': CCGGAAGGAGUAACUAGAGUCCCGGAAAAGUGCG-UCC--ACGAAAAGAUUUAGUAGUUCCAAUAGAAG----UCG 5'

 -29.00 1 RIC-seq