Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865672:139865697:[+] chr13:45911017:45911044:[-] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGAAAAAUCUGU---GUCUUC 3'


            ||||: ||| :|||:


target  3':UCAGAGAAAAAUAAGAGAACCAUUAGAG 5'

 -9.20 1 RIC-seq
chrX:139865672:139865735:[+] chr13:45911017:45911063:[-] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUCUUCCA 3'


            ||||: ||| || || ||||||||| || ||| |||||


target  3':UCAGAGAAAAAUAAGAGAACCAUUAG-------------AGAAGGUCAAUU-GAU---GAAGGC 5'

 -26.80 34 RIC-seq
chrX:139865673:139865735:[+] chr13:45911017:45911063:[-] nonBSJ supported 3UTR

circRNA 5': GUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAAUCUAGUUCUUCCA 3'


            ||||: ||| || || ||||||||| || ||| |||||


target  3':UCAGAGAAAAAUAAGAGAACCAUUAG-------------AGAAGGUCAAUU-GAU---GAAGGC 5'

 -26.80 1 RIC-seq
chrX:139865819:139865840:[+] chr13:45911175:45911194:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUCCAGUC--AGUCA 3'


            ||||| |:|||| ||||


target  3':AAGGUC---AGGGUCUUCAUCAG 5'

 -17.80 1 RIC-seq
chrX:139865819:139865840:[+] chr13:45911175:45911195:[-] nonBSJ supported 3UTR

circRNA 5':AUCCAGGUCUUCCAGUC--AGUCA 3'


            ||||| |:|||| ||||


target  3':AAGGUC---AGGGUCUUCAUCAGA 5'

 -17.60 15 RIC-seq