Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865745:139865774:[+] chr1:11716071:11716102:[+] nonBSJ supported CDS

circRNA 5':AGAUCUUCCAGUCAAUCA-GUGUC--UUCCAGA 3'


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target  3': CUAGAAGGUCAGCCGGUGCCCGACCAGGGUCA 5'

 -28.30 22 RIC-seq
chrX:139865748:139865774:[+] chr1:11716071:11716099:[+] nonBSJ supported CDS

circRNA 5':UCUUCCAGUCAAUCA-GUGUC--UUCCAGA 3'


            ||||||||| :|| | |: |:||||


target  3': GAAGGUCAGCCGGUGCCCGACCAGGGUCA 5'

 -22.30 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:11716071:11716102:[+] target - chr1:11716100-11716101 A>G PACA-CA ICGC