Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865474:139865492:[+] chr1:155852861:155852878:[+] nonBSJ supported 3UTR

circRNA 5':GUCUUCCGGACAAUCCAUG 3'


            ||:|||: | ||||:


target  3':AAGGAGGUAGGG-AGGUGG 5'

 -16.40 6 RIC-seq
chrX:139865583:139865624:[+] chr1:155852592:155852625:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCUUCC 3'


            ||||||:||| ||: |||| |||||


target  3':AAAGGUCUUUU----UGUUUCCGGUCACAUUA----AGAAGU 5'

 -20.20 28 RIC-seq
chrX:139866198:139866237:[+] chr1:155852074:155852114:[+] nonBSJ supported 3UTR

circRNA 5':AAAAAUCC-GGGUCUUCCAGGAAAUCCGUG-UCUUCCAGCAA 3'


            ||||: :||| || |:|| ||||| |||


target  3':CUUUUGUACUCCAAAAUAUUCUCGUUUUAAAAGAAGA-CGUC 5'

 -12.60 32 RIC-seq
chrX:139866208:139866218:[+] chr1:155852072:155852084:[+] nonBSJ supported 3UTR

circRNA 5':GUCUUC--CAGGA 3'


            ||||| |||:


target  3':AAGAAGACGUCUC 5'

 -7.40 1 RIC-seq
chrX:139866216:139866250:[+] chr1:155852078:155852115:[+] nonBSJ supported 3UTR

circRNA 5':GGAAAUCCGUGUCUUCC------AGCAAGUCCACGUCUUCC 3'


            |||| |:|| |||||: |||||


target  3':ACUUUU-GUACUCCAAAAUAUUCUCGUUUUAAA--AGAAGA 5'

 -12.20 1 RIC-seq
chrX:139866641:139866697:[+] chr1:155852548:155852597:[+] nonBSJ supported 3UTR

circRNA 5':GCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU 3'


            |||| |:| |||| | ||||||| || |:|| |||: ||||


target  3':AGAAGUUUGGAGACUA-CUGAAGGUU-----GG-GUAGUUGGUUCUUUACCGACAGU 5'

 -34.20 13 RIC-seq
chrX:139866642:139866697:[+] chr1:155852548:155852597:[+] nonBSJ supported 3UTR

circRNA 5': CUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU 3'


            |||| |:| |||| | ||||||| || |:|| |||: ||||


target  3':AGAAGUUUGGAGACUA-CUGAAGGUU-----GG-GUAGUUGGUUCUUUACCGACAGU 5'

 -34.00 1 RIC-seq
chrX:139866660:139866697:[+] chr1:155852548:155852578:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU 3'


            |||||| || |:|| |||: ||||


target  3': AAGGUU-----GG-GUAGUUGGUUCUUUACCGACAGU 5'

 -19.70 11 RIC-seq
chrX:139866661:139866697:[+] chr1:155852548:155852577:[+] nonBSJ supported 3UTR

circRNA 5':UUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCU 3'


            ||||| || |:|| |||: ||||


target  3': AGGUU-----GG-GUAGUUGGUUCUUUACCGACAGU 5'

 -18.90 2 RIC-seq
chrX:139866044:139866073:[+] chr1:155837896:155837925:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCGG-AUAAUUUGG-GUCUUCCUGAA 3'


            ||||: || ||| :||: |:||| |||


target  3':CCAGAGACCCAUAUACGACUACGGAA--ACUC 5'

 -14.60 9 RIC-seq