Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865376:139865445:[+] chr1:156641318:156641386:[-] nonBSJ supported CDS

circRNA 5':ACUCCGGGUCUUCCAGCGACUUCAAGUCUUCCAAUAAUCUCAAGGU---CUUCCAGAUAAUCC---------UGAGCUUCCA 3'


            |||| |||||||| || |||| ||| |||| ||| |||||| | ||| |||: ||||


target  3':AGAGG---AGAAGGUC-CU------CAGAC--UUAC-AGAGAACCAAGUGAAGGUGUCUGAGGUCACCAAGAACUUAAAGGA 5'

 -43.00 1 RIC-seq
chrX:139865559:139865604:[+] chr1:156642663:156642713:[-] nonBSJ supported CDS

circRNA 5':ACUGGUCUU-----CCACCAAAUC--CAGAUCUUCCAGGAAAAUCCAC-GUCUU 3'


            ||||: ||||| ||| :|: |||| || |:||


target  3':CGACCGUCCUUACCGGUGGGACCGAAGUC-GGGC-GUCCCCG-AGACCUCGGAC 5'

 -24.10 1 RIC-seq
chrX:139866161:139866208:[+] chr1:156642319:156642371:[-] nonBSJ supported CDS

circRNA 5':AGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGC--------UUCCAAAA-AAUCCGGG 3'


            ||| ||||: |||| || :|| ||||||| ||:| |||


target  3':ACUUAGAGGAG----AGGGUCUCU-GAAGUCCCAAAGAAAAAGGUUUCCUUGGACCCU 5'

 -24.60 1 RIC-seq
chrX:139866178:139866214:[+] chr1:156642316:156642343:[-] nonBSJ supported CDS

circRNA 5':CCUUAAAUCUAUAGCUUCCAAAAAAUCCGGGUCUUCC 3'


            ||| ||||| ||:||| |:| ||||


target  3':AGAACUUAGAGGA-GAGGGU--------CUCUGAAGU 5'

 -18.70 1 RIC-seq
chrX:139866373:139866398:[+] chr1:156639456:156639480:[-] nonBSJ supported CDS

circRNA 5':UUCCAACAAAGCCAUGUCUUCCAUCA 3'


            ||||| ||:| ||| ||


target  3':GAGGUUCCUUUGUCCCAGUCUG-AGA 5'

 -11.40 2 RIC-seq
chrX:139866758:139866807:[+] chr1:156641842:156641890:[-] nonBSJ supported CDS

circRNA 5':UGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCU---GACAUUCAGGUCUUCCA 3'


            |||| |:||| ||| || |||||| ||| :||||| ||||


target  3':CUAGAUUUC--CGGAGAA-ACAAGAGUAGAAGUUCUCUG-GAGUCCCCAAGGA 5'

 -34.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866758:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC