Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866202:139866213:[+] chr20:10199589:10199600:[+] nonBSJ supported 5UTR

circRNA 5':AUCCGGGUCUUC 3'


            ||||||:||:


target  3':GAGGCCCGGAGA 5'

 -18.50 2 RIC-seq
chrX:139866202:139866218:[+] chr20:10199583:10199600:[+] nonBSJ supported 5UTR

circRNA 5':AUCCGGGUCUUC-CAGGA 3'


            ||||||:||: ||||


target  3':GAGGCCCGGAGACGUCCA 5'

 -23.90 23 RIC-seq
chrX:139866221:139866237:[+] chr20:10265379:10265399:[+] nonBSJ supported CDS

circRNA 5':UCCGU-GUCUU----CCAGCAA 3'


            ||: |||:| ||||||


target  3': GGUUUCAGGACUAUGGUCGUA 5'

 -15.00 1 RIC-seq
chrX:139866221:139866237:[+] chr20:10265379:10265400:[+] nonBSJ supported CDS

circRNA 5':UCCGU-GUCUU----CCAGCAA 3'


            ||: |||:| ||||||


target  3':UGGUUUCAGGACUAUGGUCGUA 5'

 -15.60 2 RIC-seq
chrX:139866255:139866277:[+] chr20:10265377:10265402:[+] nonBSJ supported CDS

circRNA 5':AAGCCAU-GUCUU----CCAGACUAUCC 3'


            |:||| |||:| |||| | |||


target  3':AUUGGUUUCAGGACUAUGGUC-G-UAGA 5'

 -15.80 13 RIC-seq
chrX:139866687:139866703:[+] chr20:10258362:10258375:[+] nonBSJ supported CDS

circRNA 5':UCUCUGUGUCUUCCAGC 3'


            |||| || ||||


target  3':GGAGA---AGUUGGUCA 5'

 -11.40 22 RIC-seq
chrX:139866710:139866722:[+] chr20:10258365:10258375:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAACA 3'


            | |||| ||||


target  3': GGAGAA-GUUGG 5'

 -7.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr20:10265377:10265402:[+] target 1285516 chr20:10265384-10265385 G>C Inborn_genetic_diseases|Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Congenital_myasthenic_syndrome_18 ClinVar
chr20:10265377:10265402:[+] target 208672 chr20:10265399-10265400 G>T Unilateral_Hypotonia|Epilepsy_with_generalized_tonic-clonic_seizures|Focal_epilepsy|Intellectual_disability|Early_infantile_epileptic_encephalopathy_with_suppression_bursts|not_provided ClinVar
chr20:10265379:10265399:[+] target 1285516 chr20:10265384-10265385 G>C Inborn_genetic_diseases|Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Congenital_myasthenic_syndrome_18 ClinVar
chr20:10265379:10265400:[+] target 1285516 chr20:10265384-10265385 G>C Inborn_genetic_diseases|Early_infantile_epileptic_encephalopathy_with_suppression_bursts|Congenital_myasthenic_syndrome_18 ClinVar
chr20:10265379:10265400:[+] target 208672 chr20:10265399-10265400 G>T Unilateral_Hypotonia|Epilepsy_with_generalized_tonic-clonic_seizures|Focal_epilepsy|Intellectual_disability|Early_infantile_epileptic_encephalopathy_with_suppression_bursts|not_provided ClinVar