Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865728:139865784:[+] chr8:100568693:100568729:[+] nonBSJ supported CDS

circRNA 5':UUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCA 3'


            ||||| || ||| |||| ||| :|||: | ||||| |||


target  3':CAGAAG--CUAA--AGA-CUAG-----------GUCCUAGAG---C-UUCUUAAGGA 5'

 -19.30 1 RIC-seq
chrX:139865754:139865788:[+] chr8:100568705:100568734:[+] nonBSJ supported CDS

circRNA 5':AGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGG-UC 3'


            ||| ||||||| ||||||| ||


target  3':ACAG------ACAGAAGCUAAAGAC-UAGGUCCUAGA 5'

 -20.10 1 RIC-seq
chrX:139865754:139865790:[+] chr8:100568703:100568734:[+] nonBSJ supported CDS

circRNA 5':AGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGG-UCUU 3'


            ||| ||||||| ||||||| |||:


target  3':ACAG------ACAGAAGCUAAAGAC-UAGGUCCUAGAGC 5'

 -23.10 4 RIC-seq
chrX:139865754:139865791:[+] chr8:100568703:100568734:[+] nonBSJ supported CDS

circRNA 5':AGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGG-UCUUC 3'


            ||| ||||||| ||||||| |||:


target  3':ACAG------ACAGAAGCUAAAGAC-UAGGUCCUAGAGC 5'

 -23.40 13 RIC-seq
chrX:139865997:139866027:[+] chr8:100533153:100533179:[+] nonBSJ supported CDS

circRNA 5':AGUAACCUC-CCAGUCUUCCAGAAAAUCCACG 3'


            |:||| |||:||||| |||| ||||


target  3':CCGUUGUCUCGGUUAGAAG---UUUU-GGUG 5'

 -22.70 41 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr8:100533153:100533179:[+] target 449803 chr8:100533166-100533167 T>A Cohen_syndrome|not_provided|not_specified ClinVar
chr8:100568693:100568729:[+] target 370402 chr8:100568703-100568704 C>T Cohen_syndrome ClinVar
chr8:100568703:100568734:[+] target 370402 chr8:100568703-100568704 C>T Cohen_syndrome ClinVar
chr8:100568703:100568734:[+] target 56670 chr8:100568733-100568734 C>CAAT Cohen_syndrome|not_provided ClinVar
chr8:100568705:100568734:[+] target 56670 chr8:100568733-100568734 C>CAAT Cohen_syndrome|not_provided ClinVar