Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865751:139865771:[+] chr4:71555570:71555596:[+] nonBSJ supported CDS

circRNA 5':UCCAGUCAAUCAGUGU------CUUCC 3'


            || || ||||||: ||||


target  3':CGGACAAGAAGUCACGAUAAAAGAAGA 5'

 -12.50 1 RIC-seq
chrX:139865790:139865810:[+] chr4:71555570:71555596:[+] nonBSJ supported CDS

circRNA 5':UCCAGUCAAUCAGUGU------CUUCC 3'


            || || ||||||: ||||


target  3':CGGACAAGAAGUCACGAUAAAAGAAGA 5'

 -12.50 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:71555570:71555596:[+] target - chr4:71555583-71555584 A>G LINC-JP ICGC