Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865988:139866008:[+] chr4:73957993:73958018:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUC------CAGUAACCUCCCA 3'


            |||||| |||| | :|||


target  3':AACAGAACAACUAAGUCACGGUGGGG 5'

 -14.80 12 RIC-seq
chrX:139866122:139866161:[+] chr4:73986611:73986661:[-] nonBSJ supported CDS

circRNA 5':CCAAUG---GCC--UC---CAGGUCUUCCAGACUAUCCAU----G-UCUUCCA 3'


            |||:: || || ||:|: |||||| |||: | ||||||


target  3':AGUUGUAAACGAAAAGAUAGUUCGUCU--UCUGAUUGGUGAAGUCAAGAAGGA 5'

 -22.80 1 RIC-seq
chrX:139866122:139866172:[+] chr4:73986611:73986664:[-] nonBSJ supported CDS

circRNA 5':CCAAUG---GCC--UC---CAGGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUG 3'


            |||:: || || ||:|: |||||| ||| ||| ||| ||||||


target  3':AGUUGUAAACGAAAAGAUAGUUCGUCU--UCUGAUUGGU---GAA-GUCAAGAAGGAACC 5'

 -24.70 8 RIC-seq
chrX:139866132:139866172:[+] chr4:73986629:73986664:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUG 3'


            ||:|: |||||| ||| ||| ||| ||||||


target  3':AGUUCGUCU--UCUGAUUGGU---GAA-GUCAAGAAGGAACC 5'

 -24.70 1 RIC-seq