Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865655:139865679:[+] chr4:7000836:7000852:[+] nonBSJ supported CDS

circRNA 5':AUCUUCCAGCUAAUCCAUGUCUUCC 3'


            ||||||||| || ||||


target  3':AAGAAGGUCG-------AC-GAAGA 5'

 -17.90 2 RIC-seq
chrX:139865673:139865698:[+] chr4:7000832:7000852:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            |||||||| |||: ||||||


target  3':AAGAAGGUC------GACGAAGAAGGA 5'

 -23.20 1 RIC-seq
chrX:139865673:139865698:[+] chr4:7000834:7000852:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAAUCUGUGUCUUCC 3'


            |||||||| |||: |||||


target  3':AAGAAGGUC------GACGAAGAAG 5'

 -20.50 12 RIC-seq
chrX:139865673:139865699:[+] chr4:7000832:7000852:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAAUCUGUGUCUUCCA 3'


            |||||||| |||: ||||||


target  3':AAGAAGGUC------GACGAAGAAGGA 5'

 -24.50 16 RIC-seq
chrX:139866279:139866304:[+] chr4:6995916:6995936:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAAUCCUUGUCUUCC 3'


            ||||||||| ||||||||||


target  3':CCAGAAGGUC-----GGAACAGAAGU 5'

 -29.40 21 RIC-seq