Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865718:139865737:[+] chr5:71501799:71501820:[+] nonBSJ supported 3UTR

circRNA 5':GUAAAUCUA--GUUCUUCCAGA 3'


            ||||:| |: ||||


target  3':GGUUUGGUGAACGUACCGGUCA 5'

 -8.00 1 RIC-seq
chrX:139865784:139865804:[+] chr5:71502953:71502973:[+] nonBSJ supported 3UTR

circRNA 5':AGGUCUUCCAGUCAAUCAGUG 3'


            ||: |:|||| ||||


target  3':ACCGAAGGGUCCAAGUGUCAA 5'

 -16.70 2 RIC-seq
chrX:139866330:139866360:[+] chr5:71501990:71502022:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGUC--UUCC--AGG-AAAUCCGUGUCUUCCAG 3'


            ||:||| |||| ||| |||| ||||| |||


target  3':AGUUCAGUGAAGGAUUCCGUUUA---ACAGAUGGUA 5'

 -22.80 1 RIC-seq
chrX:139866349:139866378:[+] chr5:71501990:71502019:[+] nonBSJ supported 3UTR

circRNA 5':CGUGUCUUCCA---GCAAAUCCACGUCUUCCAA 3'


            || ||||| |||||| |||| |||


target  3':UCAGUGAAGGAUUCCGUUUAA---CAGAUGGUA 5'

 -18.60 1 RIC-seq
chrX:139866405:139866458:[+] chr5:71501820:71501874:[+] nonBSJ supported 3UTR

circRNA 5': UGUCUUC---CAGCCUACUUGUGUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUA 3'


            ||:||| ||: |||||||||| || ||| ||:


target  3':UACGGAAUCUAGUUAGAUGAACACACAAAUCUCAGACUCUCAAGACUUACC---CCGG 5'

 -19.60 1 RIC-seq
chrX:139866436:139866478:[+] chr5:71503885:71503919:[+] nonBSJ supported 3UTR

circRNA 5':AGGUACGUCUUCC-AACAAAGGUACGUCUUCCAACAAAGGUAUG 3'


            ||| |:| ||||| || |||||||:


target  3': CCA-GUAUAACUCUUGUUGCCUACCUC-------UUUCCAUGA 5'

 -12.40 2 RIC-seq
chrX:139866782:139866803:[+] chr5:71504261:71504283:[+] nonBSJ supported 3UTR

circRNA 5':UGAUCUU--CUGACAUUCAGGUCU 3'


            |||| ||:||||| :||||


target  3': CUAGUAGCGAUUGUAAA-UCAGAG 5'

 -14.90 2 RIC-seq
chrX:139865338:139865403:[+] chr5:71494209:71494273:[+] nonBSJ supported CDS

circRNA 5':AGGGUUUCCGAUGGCACCUGU--GUCA--AGGUCU----UCCAACAACUCCGGGUCUUC---CAGCGACUUCAAGUC 3'


            |:|| ||||: |||| ||| || |||| ||:|: ||| || |||:


target  3':CCUCA-----------GGACGUACAGUCUUCCUGACAUCAGGUGAAGUCAA-CCGGGUAAAAGUCACUACACUUCGU 5'

 -29.50 1 RIC-seq
chrX:139865459:139865497:[+] chr5:71491719:71491758:[+] nonBSJ supported CDS

circRNA 5':UUCCAGACAAUCC---AUGUCUUCCGGACAAUCCAUGUCUUC 3'


            ||||| |||||:| | ||| |: ||||


target  3': AGGUCGACUCCGAACUACAGGAAACAAUGUAGCUGGAGAA 5'

 -17.70 1 RIC-seq
chrX:139865523:139865555:[+] chr5:71491752:71491795:[+] nonBSJ supported CDS

circRNA 5':AUCAAG-UCUUCCAGCAAAUCCA-GUCU---------UCCAGCA 3'


            ||| ||:| ||| || |||| ||||||


target  3':GAGUCAAAGGAAGUCAAAGAGAAGCAGAAGCUAAUCGAGGUCGA 5'

 -19.40 1 RIC-seq
chrX:139865527:139865556:[+] chr5:71492819:71492844:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGCAAAUCCAGUCUUCCAGCAA 3'


            |||| || ||||||| ||


target  3':CUAGA----CGACUUAAACAGAAGGAGGUA 5'

 -14.40 2 RIC-seq
chrX:139865780:139865806:[+] chr5:71411545:71411568:[+] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUCCAGUCAAUCAGUGUC 3'


            ||||:|| || |||||||| ||


target  3':CAGGUUCAAC--GUAAGUUAGUC-CAA 5'

 -20.00 1 RIC-seq
chrX:139865782:139865844:[+] chr5:71494738:71494809:[+] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCC---------------AGUCAAUCA-GUGUCUUCCAGAAAGAAAUCCAG-GUCU---UCCAGUCAGUCA-GUGU 3'


            |||| ||| |||| |:|| ||||||||| |||| |||: ||||| |:|| ||||


target  3':AGUCC-GAAAACUAUCCGUAUCGAUUUCAG-UGGUCCACAGAAGGG--------AGGUGACAGGAAGAGGUC---CGGUCCACAC 5'

 -45.40 1 RIC-seq
chrX:139866067:139866109:[+] chr5:71496160:71496196:[+] nonBSJ supported CDS

circRNA 5':UCCUGAAAAUCUACGUCUUCCAAAAAAGCC-AUGUCUUC-CAGAA 3'


            |||| ||||| ||| |: ||||


target  3':UGGACGUCACCGC-CAGAAC-------CGGCUGAACCUACGUCUC 5'

 -13.10 1 RIC-seq
chrX:139866075:139866105:[+] chr5:71492249:71492272:[+] nonBSJ supported CDS

circRNA 5':AUCUA-CGUCUUCCAAAAAAGCCAUGUCUUCC 3'


            ||| |:||||| ||| ||||:||


target  3': AGACCGUAGAAG------UCGAAACAGGAG 5'

 -19.10 1 RIC-seq
chrX:139866079:139866160:[+] chr5:71492249:71492307:[+] nonBSJ supported CDS

circRNA 5':ACGUCUUCCAAAAAA----GC-CAUG-UCUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCUUCCAGACUAUCCAUGUCUUCC 3'


            |: |||||| || |||: ||:||| |||: |||| :|||| ||| || ||||:||


target  3':AGUCGAAGGUAAAAAAGGCCGAGUAUAAGGAGG------------AGAG----ACCG------UAGAA-GUC-GAA----ACAGGAG 5'

 -35.10 1 RIC-seq
chrX:139866233:139866260:[+] chr5:71490882:71490912:[+] nonBSJ supported CDS

circRNA 5':AGCAAGUCCACGUC-UUC-CAACAAA-GCCA 3'


            || ||||||| ||| | :||


target  3':CCGAAAAGGUGCACUAAGUGAAAACACUGGA 5'

 -15.30 2 RIC-seq
chrX:139866246:139866282:[+] chr5:71499530:71499566:[+] nonBSJ supported CDS

circRNA 5':CUUCCAACAAAGCCAUGUC-UUCCAGACUAUCCAUGUC 3'


            |||| ||| ||| |||| ||| |||:||


target  3':CGAGGAGUCGUCGUCCCAGUAAGGG-UGAGUGGUGCAU 5'

 -25.80 2 RIC-seq
chrX:139866269:139866325:[+] chr5:71491565:71491627:[+] nonBSJ supported CDS

circRNA 5':AGACUA-UCCA--UGUCUUCCA-GAAAAUCCUUGUCUUCCCUCAAAU-CC-AUAGCUUC--CGAA 3'


            | ||| |||| ||:| ||| || :||| ||| || |:|||| |||


target  3':AC-GAUAAGGUCGACGGC-GGUACUGUCGACGACACCACCGAGGUCACGGCUGUCGACGUCGCUG 5'

 -25.10 4 RIC-seq
chrX:139866315:139866340:[+] chr5:71490680:71490697:[+] nonBSJ supported CDS

circRNA 5':UAGCUUCCGAAAAAUCCAGGUCUUCC 3'


            ||||| ||||: :||||


target  3':CUCGAAA-------AGGUUGGGAAG 5'

 -14.40 1 RIC-seq
chrX:139866364:139866415:[+] chr5:71490854:71490907:[+] nonBSJ supported CDS

circRNA 5':AUCCACGUC-UUC-CAACAAA-GCCAUG------UCUUCCAUCAAAUUAAUGUCUUCCAGC 3'


            ||||||| ||| | :|| ||||| || ||:| ||


target  3':AAGGUGCACUAAGUGAAAACACUGGAGUCCCCAAAGAAGAAA--------ACUGAGGAACGC 5'

 -17.40 1 RIC-seq
chrX:139866381:139866408:[+] chr5:71490495:71490530:[+] nonBSJ supported CDS

circRNA 5':AAGCCAUGUCUU--------CCA-UCAAAUUAAUGUC 3'


            |||| |||||| ||| || |:| ||:


target  3':GUCGGAACAGAAACAACCAUGGUCAGG-UGACGACGU 5'

 -16.90 2 RIC-seq
chrX:139866404:139866430:[+] chr5:71492212:71492256:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCC-----AGCCUACUU-------------GUGUCUUCC 3'


            ||||:||| ||||| ||: |: |||:|


target  3':AACAGGAGGAGUAGUCGGAGGAGAAGUCUAACAAGUCGGAGAGGA 5'

 -25.70 1 RIC-seq
chrX:139866404:139866447:[+] chr5:71493136:71493185:[+] nonBSJ supported CDS

circRNA 5':AUGUCUU-CCAGC-CUACUUGUGUCUUCCAACAAAGGU-ACGU--CUUC 3'


            ||| ||||| || |: || ||| ||: ||||


target  3':CACACACUGGUCGUGACGGUCAGUGCCUGACUCUACCACUGUGGUGAAGG 5'

 -17.80 1 RIC-seq
chrX:139866405:139866448:[+] chr5:71492230:71492267:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGCCUACUUGUGUCUUCCAACAAAGGUA-CGUCUUCC 3'


            ||||| |||| ||||:||| || :|: | |||||


target  3':GUAGAA-GUCGAA-----ACAGGAGGA-GUAGUCGGAGGAGAAGU 5'

 -29.90 1 RIC-seq
chrX:139866441:139866503:[+] chr5:71491170:71491235:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUAUGUCUUCCAACAA---AGGUAC---GUCUUCCA 3'


            | |||| :|| |||||| ||| ||:||| |||| |||:|||


target  3':ACUGAAGAAAAAA---GUGGAGAAGGAAAAAACCAAAAAGGAGGAAGAACUAUCCACAAAACAGGAGGA 5'

 -37.70 1 RIC-seq
chrX:139866441:139866503:[+] chr5:71491171:71491235:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUAUGUCUUCCAACAA---AGGUAC---GUCUUCCA 3'


            | |||| :|| |||||| ||| ||:||| |||| |||:|||


target  3':ACUGAAGAAAAAA---GUGGAGAAGGAAAAAACCAAAAAGGAGGAAGAACUAUCCACAAAACAGGAGG 5'

 -37.90 1 RIC-seq
chrX:139866645:139866664:[+] chr5:71491086:71491104:[+] nonBSJ supported CDS

circRNA 5': CCAGCAUCUGCUCGUCUUCC 3'


            || || :| |||||||


target  3':AGGAAAAAG-UG-GCAGAAGA 5'

 -12.70 2 RIC-seq
chrX:139866653:139866664:[+] chr5:71495722:71495733:[+] nonBSJ supported CDS

circRNA 5':UGCUCGUCUUCC 3'


            ||||||||||


target  3':CUGAGCAGAAGU 5'

 -16.10 1 RIC-seq
chrX:139866798:139866823:[+] chr5:71493123:71493151:[+] nonBSJ supported CDS

circRNA 5':AGGU-------CUUCCAGUGUCUGCAAUAUCCA 3'


            ||| ||||||| |||| |||


target  3':ACCACUGUGGUGAAGGUCUCAGAAC----AGGA 5'

 -19.60 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:71491170:71491235:[+] target 930211 chr5:71491217-71491218 G>T Periventricular_nodular_heterotopia_9 ClinVar
chr5:71491171:71491235:[+] target 930211 chr5:71491217-71491218 G>T Periventricular_nodular_heterotopia_9 ClinVar
chr5:71492249:71492307:[+] target 800721 chr5:71492276-71492277 G>T Autism_spectrum_disorder|White_matter_deficit|Periventricular_nodular_heterotopia|Cognitive_impairment|Hypoplasia_of_the_corpus_callosum|Periventricular_nodular_heterotopia_9 ClinVar
chr5:71499530:71499566:[+] target 3338097 chr5:71499565-71499566 GC>G Periventricular_nodular_heterotopia_9 ClinVar
chr5:71491752:71491795:[+] target - chr5:71491759-71491760 G>A PACA-CA ICGC
chr5:71492249:71492307:[+] target - chr5:71492276-71492277 G>A BTCA-JP ICGC
chr5:71493123:71493151:[+] target - chr5:71493148-71493149 A>G COCA-CN ICGC
chr5:71493136:71493185:[+] target - chr5:71493148-71493149 A>G COCA-CN ICGC
chr5:71494738:71494809:[+] target - chr5:71494748-71494749 C>T LAML-KR ICGC
chrX:139866269:139866325:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866315:139866340:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866782:139866803:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC