Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865505:139865551:[+] chr5:71493589:71493669:[+] nonBSJ supported CDS

circRNA 5':CUCCAAGUCUUCCAGUAAA----------------UCAAGUCUUCCAGCAA-AUCC-------------------AGUCUUCC 3'


            ||| || ||||| ||| | ||| ||:|| ||| |||||||


target  3':AAGGAA-AGUAGGUCUCGGUCACGACCAACUCUUGAGUACCGAA-GUUGUAGUAGUCAAAAGAAAAGAACCGGUUUCAGAAGA 5'

 -23.40 12 RIC-seq
chrX:139865505:139865551:[+] chr5:71493590:71493669:[+] nonBSJ supported CDS

circRNA 5':CUCCAAGUCUUCCAGUAAA----------------UCAAGUCUUCCAGCAA-AUCC-------------------AGUCUUCC 3'


            ||| || ||||| ||| | ||| ||:|| ||| |||||||


target  3':AAGGAA-AGUAGGUCUCGGUCACGACCAACUCUUGAGUACCGAA-GUUGUAGUAGUCAAAAGAAAAGAACCGGUUUCAGAAG 5'

 -23.20 1 RIC-seq
chrX:139865505:139865551:[+] chr5:71493609:71493669:[+] nonBSJ supported CDS

circRNA 5':CUCCAAGUCUUCCAGUAAA----------------UCAAGUCUUCCAGCAA-AUCCAGUCUUCC 3'


            ||| || ||||| ||| | ||| ||:|| || |||| |||


target  3':AAGGAA-AGUAGGUCUCGGUCACGACCAACUCUUGAGUACCGAA-GUUGUAGUA-GUCAAAAGA 5'

 -22.30 1 RIC-seq
chrX:139865527:139865590:[+] chr5:71492228:71492267:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGCAAAUCCAGUCUUCCAGCAAUUACUGGUCUUCCACCAAAUCCAGAUCUUCCAGG 3'


            ||||| |||| |||:||| |:| ::|:||:| |||| |||


target  3':GUAGAA-GUCGAAA----CAGGAGG-----AGUAGUCGGAGG-------------AGAA-GUCU 5'

 -27.60 1 RIC-seq
chrX:139865528:139865588:[+] chr5:71492235:71492277:[+] nonBSJ supported CDS

circRNA 5':GUCUUC-CA-GCAAAUCCAGUCUUCCAGCAAUUACUGGUCUUCCACCAAAUCCAGAUCUUCCA 3'


            ||:|| | ||| |||| |||| |||:||| || ||| |:|||


target  3': AGGAGAGACCGU-------AGAA-GUCGAAA-----CAGGAGGAG---UA-GUC--GGAGGA 5'

 -27.40 1 RIC-seq
chrX:139865528:139865590:[+] chr5:71492228:71492277:[+] nonBSJ supported CDS

circRNA 5':GUCUUC-CA-GCAAAUCCAGUCUUCCAGCAAUUACUGGUCUUCCACCAAAUCCAGA-UCUUC--CAGG 3'


            ||:|| | ||| |||| |||| |||:||| || ||| ||:|| |||


target  3': AGGAGAGACCGU-------AGAA-GUCGAAA-----CAGGAGGAG---UA-GUCGGAGGAGAAGUCU 5'

 -28.80 17 RIC-seq
chrX:139865535:139865592:[+] chr5:71491677:71491732:[+] nonBSJ supported CDS

circRNA 5':AGCAAAU-CCAGUCUUCCAGCAAUUACUGGUCUUCCA---CCAAAUCCAGAUCUUCCAGGAA 3'


            ||| || |||| |||| ||| : ||||| || |||||:| |||||


target  3':AUGUAGCUGG--AGAA-GUCGGAAAU--UGAGAAGUUUCAGGAACCAAUCUAGGA-GUCCUC 5'

 -31.40 7 RIC-seq
chrX:139865536:139865592:[+] chr5:71491677:71491732:[+] nonBSJ supported CDS

circRNA 5': GCAAAU-CCAGUCUUCCAGCAAUUACUGGUCUUCCA---CCAAAUCCAGAUCUUCCAGGAA 3'


            ||| || |||| |||| ||| : ||||| || |||||:| |||||


target  3':AUGUAGCUGG--AGAA-GUCGGAAAU--UGAGAAGUUUCAGGAACCAAUCUAGGA-GUCCUC 5'

 -31.10 1 RIC-seq
chrX:139865541:139865592:[+] chr5:71491677:71491725:[+] nonBSJ supported CDS

circRNA 5':UCCAGUCUUCCAGCAAUUACUGGUCUUCCA---CCAAAUCCAGAUCUUCCAGGAA 3'


            || |||| |||| ||| : ||||| || |||||:| |||||


target  3':UGG--AGAA-GUCGGAAAU--UGAGAAGUUUCAGGAACCAAUCUAGGA-GUCCUC 5'

 -29.80 1 RIC-seq
chrX:139865544:139865590:[+] chr5:71492228:71492267:[+] nonBSJ supported CDS

circRNA 5':AGUCUUCCAGCAAUUACUGGUCUUCCACCAAAUCCAGA-UCUUC--CAGG 3'


            ||||| |||| |||:||| || ||| ||:|| |||


target  3':GUAGAA-GUCGAAA-----CAGGAGGAG---UA-GUCGGAGGAGAAGUCU 5'

 -25.90 1 RIC-seq
chrX:139865724:139865733:[+] chr5:71493724:71493735:[+] nonBSJ supported CDS

circRNA 5':CUAGU-UCUUC 3'


            |||| |||||


target  3':AAUCACAGAAGA 5'

 -7.10 9 RIC-seq
chrX:139865726:139865758:[+] chr5:71495109:71495141:[+] nonBSJ supported CDS

circRNA 5':AGUUCUUCCAGAAAAA-UCUAGAUCUUCCAGUCA 3'


            ||: ||||||| ||||||:||: |||||


target  3':ACAGU-AGGUCUUCGGAAGAUCUGGAGAGUCAGA 5'

 -32.70 25 RIC-seq
chrX:139865761:139865801:[+] chr5:71493697:71493734:[+] nonBSJ supported CDS

circRNA 5':CAGUGUCUUCCA-GAAAGAAAUCCAGGUCUUCCAGUCAAUCA 3'


            ||||||||| :||||| ||||:: || | | | |||


target  3':AUCACAGAAGAAAUUUUCU--AGGUUU-GACUGACUG-UAGA 5'

 -23.90 2 RIC-seq
chrX:139865761:139865806:[+] chr5:71493688:71493734:[+] nonBSJ supported CDS

circRNA 5':CAGUGUCUUCCA-GAAAGAAAUCCAGGUCUUCCA---GUCAAUCAGUGUC 3'


            ||||||||| :||||| ||||:: || :|| || ||||


target  3':AUCACAGAAGAAAUUUUCU--AGGUUU-GACUGACUGUAGAUAAACACAC 5'

 -26.80 10 RIC-seq
chrX:139865762:139865801:[+] chr5:71495114:71495143:[+] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAG-UCAAUCA 3'


            ||||| |||||| :|:|||| || :| ||


target  3':CUACAGUAGGUCU----------UCGGAAGAUCUGGAGAG 5'

 -25.80 1 RIC-seq
chrX:139865878:139865908:[+] chr5:71489751:71489780:[+] nonBSJ supported CDS

circRNA 5':AGG---UCUUCCAGUCAAUCCACAUCUUCCGGAA 3'


            || |||||||||| :|| ||||| |||


target  3':ACCUCAAGAAGGUCAG--GGGA--AGAAGUCCUG 5'

 -28.70 6 RIC-seq
chrX:139865911:139865929:[+] chr5:71493303:71493326:[+] nonBSJ supported CDS

circRNA 5':AAUCCA--GGUCUU-CC--AGCCA 3'


            ||||| || ||| | ||||


target  3':GUAGGUACCCCGAAUGACUUCGGG 5'

 -13.70 15 RIC-seq
chrX:139865943:139865949:[+] chr5:71494633:71494639:[+] nonBSJ supported CDS

circRNA 5':UGAAGAU 3'


            |||||


target  3':UCUUCUC 5'

 -5.20 11 RIC-seq
chrX:139866152:139866161:[+] chr5:71494766:71494775:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCA 3'


            ||||||||


target  3':CACAGAAGGG 5'

 -12.80 1 RIC-seq
chrX:139866258:139866307:[+] chr5:71490118:71490152:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGACUAUCCAUGUC--UUCCAGAAAAUCCUUGUCUUCCCUC 3'


            ||||: ||| |||||| || ||||| ||||:


target  3':UGUACG---------------ACAAAUAAGGUCCGUUU--AACAGUAGGGGU 5'

 -24.00 2 RIC-seq
chrX:139866258:139866309:[+] chr5:71490116:71490152:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGACUAUCCAUGUC--UUCCAGAAAAUCCUUGUCUUCCCUCAA 3'


            ||||: ||| |||||| || ||||| |||| |||


target  3':UGUACG---------------ACAAAUAAGGUCCGUUU--AACAGUAGGG-GUUA 5'

 -24.20 1 RIC-seq
chrX:139866258:139866310:[+] chr5:71490116:71490152:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGACUAUCCAUGUC--UUCCAGAAAAUCCUUGUCUUCCCUCAAA 3'


            ||||: ||| |||||| || ||||| |||| |||


target  3':UGUACG---------------ACAAAUAAGGUCCGUUU--AACAGUAGGG-GUUA 5'

 -24.70 23 RIC-seq
chrX:139866279:139866308:[+] chr5:71494763:71494784:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAGAAAAUCCUUGUCUUCCCUCA 3'


            ||| |||| |||||||||||


target  3':UCAGU-GGUCC-------ACAGAAGGGAGG 5'

 -26.20 3 RIC-seq
chrX:139866312:139866362:[+] chr5:71494763:71494794:[+] nonBSJ supported CDS

circRNA 5':CCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCA 3'


            ||||||| |:||| ||||| |||||||| |


target  3':CGUAUCGAU-----------UUCAGU-GGUCC-------ACAGAAGGGAGG 5'

 -30.50 1 RIC-seq
chrX:139866312:139866370:[+] chr5:71494761:71494794:[+] nonBSJ supported CDS

circRNA 5':CCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAAUCCACG 3'


            ||||||| |:||| ||||| |||||||| |||||


target  3':CGUAUCGAU-----------UUCAGU-GGUCC-------ACAGAAGGG-----AGGUG 5'

 -34.30 29 RIC-seq
chrX:139866332:139866352:[+] chr5:71492732:71492752:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGGAAAUCCGUG 3'


            |:||:| |||:||||||||


target  3':ACUAGGAAGUCUUUUAGGCAA 5'

 -25.00 14 RIC-seq
chrX:139866332:139866361:[+] chr5:71489753:71489780:[+] nonBSJ supported CDS

circRNA 5':AGG---UCUUCCAGGAAAUCCGUGUCUUCCAGC 3'


            || |||||||| ||| : |||| |||


target  3':ACCUCAAGAAGGUC----AGGGGAAGAA-GUCC 5'

 -22.30 1 RIC-seq
chrX:139866332:139866363:[+] chr5:71489749:71489780:[+] nonBSJ supported CDS

circRNA 5':AGG---UCUUCCAGGAAAUCCGUGUCUUCCA-GCAA 3'


            || |||||||| ||| : ||||| :||


target  3':ACCUCAAGAAGGUC----AGGGGAAGAAGUCCUGUC 5'

 -23.00 8 RIC-seq
chrX:139866332:139866363:[+] chr5:71489750:71489780:[+] nonBSJ supported CDS

circRNA 5':AGG---UCUUCCAGGAAAUCCGUGUCUUCCA-GCAA 3'


            || |||||||| ||| : ||||| :||


target  3':ACCUCAAGAAGGUC----AGGGGAAGAAGUCCUGU 5'

 -22.80 1 RIC-seq
chrX:139866340:139866352:[+] chr5:71492732:71492745:[+] nonBSJ supported CDS

circRNA 5': CAGGAAAUCCGUG 3'


            |||:||||||||


target  3':AGUCUUUUAGGCAA 5'

 -17.80 1 RIC-seq
chrX:139866341:139866376:[+] chr5:71489759:71489780:[+] nonBSJ supported CDS

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCC 3'


            ||| || |||||||| ||| :||||


target  3':ACCU-----CA-AGAAGGUC----AGG---GGAAG 5'

 -18.80 9 RIC-seq
chrX:139866527:139866574:[+] chr5:71492013:71492058:[+] nonBSJ supported CDS

circRNA 5':GCCAUGUCUUCCAGAAAAUCCAC-GUCUUC-CAGAAAAUAUAUGUCUUCC 3'


            || :||:|| ||| | |:||:| ||| ||:||||


target  3':AGGGGUAGGAGAAGACCGAGGAGUCGGAGGAGUCAAAG----ACGGAAGA 5'

 -29.50 14 RIC-seq
chrX:139866586:139866629:[+] chr5:71492025:71492062:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCA-GGUCUUC-CA 3'


            ||:||| |||| ||||| |||| :|:||:| ||


target  3':AAGGAGGGG---UAGG---AGAAGACC---GAGGAGUCGGAGGAGUC 5'

 -29.00 14 RIC-seq
chrX:139866694:139866717:[+] chr5:71494286:71494306:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGCAUCUUCAUGUCUUC 3'


            ||:|||| |:||||


target  3':GAGGAGGUAUCCACC--AUAGAA 5'

 -11.90 17 RIC-seq
chrX:139866754:139866783:[+] chr5:71491991:71492018:[+] nonBSJ supported CDS

circRNA 5':UCCAUGUCUUCCAACGUCUCCAGUGUGCUG 3'


            || | ||||| ||||||||| | |||


target  3': GGAAGAGAAGUAU-CAGAGGUCAGA-GACU 5'

 -26.30 14 RIC-seq
chrX:139866768:139866783:[+] chr5:71491991:71492006:[+] nonBSJ supported CDS

circRNA 5':CGUCUCCAGUGUGCUG 3'


            ||||||||| | |||


target  3':UCAGAGGUCAGA-GACU 5'

 -19.70 11 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:71492228:71492277:[+] target 800721 chr5:71492276-71492277 G>T Autism_spectrum_disorder|White_matter_deficit|Periventricular_nodular_heterotopia|Cognitive_impairment|Hypoplasia_of_the_corpus_callosum|Periventricular_nodular_heterotopia_9 ClinVar
chr5:71492235:71492277:[+] target 800721 chr5:71492276-71492277 G>T Autism_spectrum_disorder|White_matter_deficit|Periventricular_nodular_heterotopia|Cognitive_impairment|Hypoplasia_of_the_corpus_callosum|Periventricular_nodular_heterotopia_9 ClinVar
chr5:71492228:71492277:[+] target - chr5:71492276-71492277 G>A BTCA-JP ICGC
chr5:71492235:71492277:[+] target - chr5:71492276-71492277 G>A BTCA-JP ICGC
chrX:139865878:139865908:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139866312:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866312:139866370:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866586:139866629:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC