Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865669:139865686:[+] chrX:73806753:73806772:[-] nonBSJ supported 3UTR

circRNA 5': CCAUGUCUUC-CAGAAAAA 3'


            || :|||:| ||:||||


target  3':UGGGGUAGAGGUGUUUUUUA 5'

 -14.00 16 RIC-seq
chrX:139865671:139865682:[+] chrX:73806707:73806721:[-] nonBSJ supported 3UTR

circRNA 5':AUGUCU---UCCAGA 3'


            ||:|| :||||


target  3':AACGGACUCGGGUCC 5'

 -10.70 1 RIC-seq
chrX:139866341:139866353:[+] chrX:73808798:73808810:[-] nonBSJ supported 3UTR

circRNA 5':AGGAAAUCCGUGU 3'


            |||||||||||


target  3':ACCUUUAGGCACU 5'

 -19.10 1 RIC-seq
chrX:139866341:139866391:[+] chrX:73808798:73808844:[-] nonBSJ supported 3UTR

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGC-CAUGUCU 3'


            ||||||||||| :| || ||| ||| || ||||||


target  3':ACCUUUAGGCACUCACGA-UGACUUUUUCCACAAG--UGUA-CGUGUACAG 5'

 -30.00 1 RIC-seq
chrX:139866341:139866392:[+] chrX:73808798:73808845:[-] nonBSJ supported 3UTR

circRNA 5':AGGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGC-CAUGUCUU 3'


            ||||||||||| :| || ||| ||| || ||||||:


target  3':ACCUUUAGGCACUCACGA-UGACUUUUUCCACAAG--UGUA-CGUGUACAGG 5'

 -30.50 20 RIC-seq