Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865649:139865709:[+] chr17:29859004:29859047:[+] nonBSJ supported 3UTR

circRNA 5':AUACAGAUCUUCC----AGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAA 3'


            ||||| :||| ||| || ||:||: ||:|||| ||||


target  3':AAUGUCAUUGAGGACUAUCGUCU-GGAACGGAG----------------GAGGGUGA---AGGU 5'

 -29.20 4 RIC-seq
chrX:139865649:139865733:[+] chr17:29858988:29859047:[+] nonBSJ supported 3UTR

circRNA 5':AUACAGAUCUUCC----AGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAA-UCUAGUUCUUC 3'


            ||||| :||| ||| || ||:||:| ||| ||||||||| ||| |::|:|


target  3':AAUGUCAUUGAGGACUAUCGUCU-GGAACGGAGG--------------------------AGGGU--GAAGGUCAUGGGAGA-CGGGGAA 5'

 -41.70 14 RIC-seq
chrX:139865650:139865733:[+] chr17:29858988:29859047:[+] nonBSJ supported 3UTR

circRNA 5': UACAGAUCUUCC----AGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAA-UCUAGUUCUUC 3'


            ||||| :||| ||| || ||:||:| ||| ||||||||| ||| |::|:|


target  3':AAUGUCAUUGAGGACUAUCGUCU-GGAACGGAGG--------------------------AGGGU--GAAGGUCAUGGGAGA-CGGGGAA 5'

 -41.70 1 RIC-seq
chrX:139865651:139865682:[+] chr17:29859002:29859029:[+] nonBSJ supported 3UTR

circRNA 5':ACAGAUCUU-CCAGCUAAUCCAUGUCUUCCAGA 3'


            ||||:||| || || :||| |||||||


target  3':CGUCUGGAACGGAGGA--GGGU---GAAGGUCA 5'

 -27.20 1 RIC-seq
chrX:139865660:139865719:[+] chr17:29859003:29859045:[+] nonBSJ supported 3UTR

circRNA 5':CCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGU 3'


            ||| ||| || |||| :|| ||:||:| ||| |||||||


target  3':UGUCAUUGAGG-ACUAUC-GUCU----GGA-ACGGAGGAGGGU---------GAAGGUC 5'

 -30.80 14 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:29858988:29859047:[+] target - chr17:29859002-29859003 A>G LICA-CN ICGC
chr17:29858988:29859047:[+] target - chr17:29859016-29859017 G>A LAML-KR ICGC
chr17:29858988:29859047:[+] target - chr17:29859038-29859039 G>A EOPC-DE ICGC
chr17:29859002:29859029:[+] target - chr17:29859016-29859017 G>A LAML-KR ICGC
chr17:29859003:29859045:[+] target - chr17:29859016-29859017 G>A LAML-KR ICGC
chr17:29859003:29859045:[+] target - chr17:29859038-29859039 G>A EOPC-DE ICGC
chr17:29859004:29859047:[+] target - chr17:29859016-29859017 G>A LAML-KR ICGC
chr17:29859004:29859047:[+] target - chr17:29859038-29859039 G>A EOPC-DE ICGC