Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866059:139866093:[+] chr1:40555159:40555182:[-] nonBSJ supported CDS

circRNA 5':UUGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAA 3'


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target  3': ACCCG----------UAGCUCCCUCAGGUUUUUG 5'

 -12.50 24 RIC-seq
chrX:139866060:139866077:[+] chr1:40555168:40555183:[-] nonBSJ supported CDS

circRNA 5':UGGGUCUUCCUGAAAAUC 3'


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target  3':UCCCUC-AGG-UUUUUGU 5'

 -9.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:40555159:40555182:[-] target 56196 chr1:40555162-40555163 G>T Neuronal_ceroid_lipofuscinosis_1 ClinVar
chr1:40555159:40555182:[-] target 56195 chr1:40555163-40555164 C>T Neuronal_ceroid_lipofuscinosis_1 ClinVar
chr1:40555159:40555182:[-] target 8904 chr1:40555167-40555168 G>A PPT1-related_disorder|Inborn_genetic_diseases|Neuronal_Ceroid-Lipofuscinosis,_Recessive|Neuronal_ceroid_lipofuscinosis|Neuronal_ceroid_lipofuscinosis_1|not_provided ClinVar
chr1:40555159:40555182:[-] target 1251928 chr1:40555176-40555177 C>A Neuronal_ceroid_lipofuscinosis_1 ClinVar
chr1:40555159:40555182:[-] target 2110798 chr1:40555176-40555177 CAA>C Neuronal_ceroid_lipofuscinosis_1 ClinVar
chr1:40555168:40555183:[-] target 1251928 chr1:40555176-40555177 C>A Neuronal_ceroid_lipofuscinosis_1 ClinVar
chr1:40555168:40555183:[-] target 2110798 chr1:40555176-40555177 CAA>C Neuronal_ceroid_lipofuscinosis_1 ClinVar