Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865635:139865639:[+] chr1:40536600:40536604:[+] nonBSJ supported CDS

circRNA 5':AGGUC 3'


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target  3':ACCGU 5'

 -3.20 2 RIC-seq
chrX:139865940:139865994:[+] chr1:40531901:40531945:[+] nonBSJ supported CDS

circRNA 5':UCCUGAAGAUCCACGUCUUCCAGAAAA-UCCAUGU-CUUCC---AGAAA--AUCCAUGUCUU 3'


            |||| ||| |||||:| ||| || |:||| ||||


target  3': GGAC---------------GUCGAGACAGGUAUAUGAAUUUAUUCGAAACUGGGU-CAGAU 5'

 -19.00 2 RIC-seq