Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865750:139865789:[+]	chr16:85813354:85813394:[-]	nonBSJ supported	CDS	circRNA 5':UUCCAGUCAAUC--AGUGUCUUCCAGAAAGAAAUCCAGGUCU 3' \|\|\|\|\|\|\|\| \|\| \|:\|\|\|\| \|\|\|\|\| \|\|\| \|::\|\| target 3':CAGGUCAGUAAGGCUUACAGUAGGUCCACCAAUAGCUUUAG 5'	-32.70	1	RIC-seq
chrX:139865789:139865828:[+]	chr16:85813354:85813394:[-]	nonBSJ supported	CDS	circRNA 5':UUCCAGUCAAUC--AGUGUCUUCCAGAAAGAAAUCCAGGUCU 3' \|\|\|\|\|\|\|\| \|\| \|:\|\|\|\| \|\|\|\|\| \|\|\| \|::\|\| target 3':CAGGUCAGUAAGGCUUACAGUAGGUCCACCAAUAGCUUUAG 5'	-32.70	28	RIC-seq
chrX:139865792:139865828:[+]	chr16:85813358:85813394:[-]	nonBSJ supported	CDS	circRNA 5':CAGUCAAUC--AGUGUCUUCCAGAAAGAAAUCCAGGUCU 3' \|\|\|\|\| \|\| \|:\|\|\|\| \|\|\|\|\| \|\|\| \|::\|\| target 3': UCAGUAAGGCUUACAGUAGGUCCACCAAUAGCUUUAG 5'	-24.50	1	RIC-seq
chrX:139865828:139865852:[+]	chr16:85813354:85813380:[-]	nonBSJ supported	CDS	circRNA 5':UUCCAGUCAG-UC-AGUGUCUUCCAGA 3' \|\|\|\|\|\|\|\| :\| \|:\|\|\|\| \|\|\|\|\| target 3':CAGGUCAGUAAGGCUUACAGUAGGUCC 5'	-29.20	4	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr16:85813354:85813380:[-]	target	-	chr16:85813371-85813372	G>T	LICA-CN	ICGC
chr16:85813354:85813394:[-]	target	-	chr16:85813371-85813372	G>T	LICA-CN	ICGC
chr16:85813358:85813394:[-]	target	-	chr16:85813371-85813372	G>T	LICA-CN	ICGC