Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866513:139866526:[+] chrX:62856099:62856111:[-] nonBSJ supported Intron

circRNA 5':CGUCUUCCAACCAA 3'


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target  3':UCAGAAGAG-GGUA 5'

 -11.60 31 RIC-seq
chrX:139866567:139866594:[+] chrX:62856099:62856111:[-] nonBSJ supported Intron

circRNA 5':UGUCUUCCAACUAAGCUACGUCUUCCAA 3'


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target  3':UCAGA---------------AGAGGGUA 5'

 -10.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866567:139866594:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC