Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866775:139866816:[+] chr9:134346190:134346229:[+] nonBSJ supported 5UTR

circRNA 5':AGUGU-GCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGCA 3'


            ||| :| | |||:: || || |||||| |||||


target  3':CCACCCUGCCGCCCCCCAUGUGG--CC-GACGGUCAC-GACGUA 5'

 -25.70 1 RIC-seq
chrX:139866775:139866816:[+] chr9:134346190:134346240:[+] nonBSJ supported 5UTR

circRNA 5':AGUGUGCUGAUCUUCUGAC----------AUUCAGGUCUUCCAGUGUCUGCA 3'


            |||:|||| ||| |: || || |||||| |||||


target  3':CCACGCGACCCCCACCCUGCCGCCCCCCAUGUGGCC-GACGGUCAC-GACGUA 5'

 -34.00 60 RIC-seq
chrX:139866777:139866816:[+] chr9:134346190:134346237:[+] nonBSJ supported 5UTR

circRNA 5':UGUGCUGAUCUUCUGAC----------AUUCAGGUCUUCCAGUGUCUGCA 3'


            |:|||| ||| |: || || |||||| |||||


target  3': CGCGACCCCCACCCUGCCGCCCCCCAUGUGGCC-GACGGUCAC-GACGUA 5'

 -28.70 1 RIC-seq
chrX:139866791:139866816:[+] chr9:134346190:134346212:[+] nonBSJ supported 5UTR

circRNA 5':GACAUUCAGGUCUUCCAGUGUCUGCA 3'


            |||:: || || |||||| |||||


target  3':AUGUGG--CC-GACGGUCAC-GACGUA 5'

 -24.10 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866775:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866777:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866791:139866816:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC