Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865764:139865796:[+] chr20:60869356:60869383:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGAAAGAAAUCCAGG--UCUUCCAGUC 3'


            | |||| ||| |||| ||::||| |


target  3':UC-GAAGUUCU------AGGUAGAAAGGGGGUGAC 5'

 -17.70 1 RIC-seq
chrX:139865764:139865815:[+] chr20:60869330:60869383:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGAAAGAAAUCCAGG--UCUUCCAGUCAAUC-AGUGU------CUUCCAGAAA 3'


            | |||| ||| |||| ||::||| | || ||| ||| |||||


target  3':UC-GAAGUUCU------AGGUAGAAAGGGGGUGACCAAGCUCAAAUUUUCCGAAAGUCUUG 5'

 -23.60 18 RIC-seq
chrX:139865767:139865815:[+] chr20:60869330:60869382:[+] nonBSJ supported 3UTR

circRNA 5': CUUCCAGAAAGAAAUCCAGG--UCUUCCAGUCAAUC-AGUGU------CUUCCAGAAA 3'


            |||| ||| |||| ||::||| | || ||| ||| |||||


target  3':CGAAGUUCU------AGGUAGAAAGGGGGUGACCAAGCUCAAAUUUUCCGAAAGUCUUG 5'

 -23.20 1 RIC-seq