Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866378:139866399:[+] chr20:62377120:62377141:[-] nonBSJ supported Intron

circRNA 5':ACAAAGCCAUGUCUUCCAUCAA 3'


            |||||||| |: ||:||


target  3':GGUUUCGGUCCGCCACGUGGUG 5'

 -18.00 1 RIC-seq
chrX:139866378:139866413:[+] chr20:62377120:62377152:[-] nonBSJ supported Intron

circRNA 5':ACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCA 3'


            |||||||| |: ||:|| |:: | ||


target  3':GGUUUCGGUCCGCCACGUGGUGUCG-UGU-GU-GGC 5'

 -18.20 1 RIC-seq
chrX:139866378:139866416:[+] chr20:62377120:62377145:[-] nonBSJ supported Intron

circRNA 5':ACAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCC 3'


            |||||||| |: ||:|| ||||


target  3':GGUUUCGGUCCGCCACGUGGU-------------GUCGU 5'

 -20.40 16 RIC-seq
chrX:139866379:139866416:[+] chr20:62377120:62377145:[-] nonBSJ supported Intron

circRNA 5': CAAAGCCAUGUCUUCCAUCAAAUUAAUGUCUUCCAGCC 3'


            |||||||| |: ||:|| ||||


target  3':GGUUUCGGUCCGCCACGUGGU-------------GUCGU 5'

 -20.10 1 RIC-seq