Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866057:139866070:[+] chr9:137979896:137979909:[+] nonBSJ supported CDS

circRNA 5':AUUUGGGUCUUCCU 3'


            |:|||| | |||


target  3':CAGACCCUGUAGGU 5'

 -13.30 1 RIC-seq
chrX:139866060:139866089:[+] chr9:137979895:137979930:[+] nonBSJ supported CDS

circRNA 5':UGGGUCUUCCUGAAAAU-CUACGUCU------UCCAA 3'


            |||:|: || | | ||||| ||||


target  3': UCCGGGUGGUCGCUCCCGUCGCAGACCCUGUAGGUC 5'

 -18.60 8 RIC-seq
chrX:139866319:139866360:[+] chr9:138011360:138011427:[+] nonBSJ supported CDS

circRNA 5':UUCCGAAAAAUCCAGGUCUUCCA-GGAAA-----UC-CGU--------------------GUCUUCCAG 3'


            |||| |:||| ||| ||| || ||| |:| ||||


target  3':CAGGCACAAGUACUUCAGUUGGUACCUGAACAUGAGUGCAUGCUUCGCCAACAACACUAUCGGCAGGU 5'

 -24.00 33 RIC-seq
chrX:139866319:139866362:[+] chr9:138011380:138011427:[+] nonBSJ supported CDS

circRNA 5':UUCCGAAAAAUCCAGGUCUUCCA-GGAAA-----UC-CGUGUCUUCCAGCA 3'


            |||| |:||| ||| ||| || |||: | |||


target  3':CAGGCACAAGUACUUCAGUUGGUACCUGAACAUGAGUGCAU-GCU--UCGC 5'

 -22.10 1 RIC-seq