Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866567:139866612:[+] chr19:17716335:17716362:[-] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAACUAAGCUACGUCUUCCAACAAAUCCAUGUCUUCCUA 3'


            |:|:||||||: ||| |||| ||| |||


target  3':CCGGGAGGUUGG-UCG---------------UAGGACCAG--GGAG 5'

 -26.50 1 RIC-seq
chrX:139866569:139866596:[+] chr19:17716336:17716362:[-] nonBSJ supported 3UTR

circRNA 5': UCUUCCAACUAAGCUACGUCU---UCCAACA 3'


            ||:||||||: ||| :||: ||| |


target  3':CGGGAGGUUGG-UCG---UAGGACCAGGGAG 5'

 -21.20 1 RIC-seq
chrX:139866606:139866638:[+] chr19:17716329:17716360:[-] nonBSJ supported 3UTR

circRNA 5':CUUCCUAUA-UCUCCAGGUCUUCCAGCAUC----UCCA 3'


            |||| :|||||: |||||||| |||


target  3': AAGGCCCCGGGAGGUU-----GGUCGUAGGACCAGGG 5'

 -26.40 1 RIC-seq
chrX:139866616:139866664:[+] chr19:17716329:17716362:[-] nonBSJ supported 3UTR

circRNA 5':CUCCA-GGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCC 3'


            ||| ||:|:||||: ||||||||: :|:||


target  3':AAGGCCCCGGGAGGUU--------------GGUCGUAGGACCA-GGGAG 5'

 -35.80 25 RIC-seq
chrX:139866616:139866664:[+] chr19:17716330:17716362:[-] nonBSJ supported 3UTR

circRNA 5':CUCCA-GGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCC 3'


            ||| ||:|:||||: ||||||||: :|:||


target  3': AGGCCCCGGGAGGUU--------------GGUCGUAGGACCA-GGGAG 5'

 -34.90 1 RIC-seq
chrX:139866202:139866218:[+] chr19:17728599:17728617:[-] nonBSJ supported CDS

circRNA 5':AUCCGGG-UCU--UCCAGGA 3'


            |||||| ||| ||||||


target  3':CAGGCCCGAGAAGAGGUCC 5'

 -24.10 2 RIC-seq
chrX:139866202:139866219:[+] chr19:17728599:17728618:[-] nonBSJ supported CDS

circRNA 5':AUCCGGG-UCU--UCCAGGAA 3'


            |||||| ||| |||||||


target  3':CAGGCCCGAGAAGAGGUCCU 5'

 -25.70 31 RIC-seq
chrX:139866202:139866232:[+] chr19:17728599:17728627:[-] nonBSJ supported CDS

circRNA 5':AUCCGGG-UCU--UCCAGGAAAUCCGUGUCUUCC 3'


            |||||| ||| |||||||| | ||||||


target  3':CAGGCCCGAGAAGAGGUCCUU----C-CAGAAGA 5'

 -32.70 34 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866567:139866612:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866569:139866596:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC