Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866023:139866038:[+] chr6:168307903:168307917:[+] nonBSJ supported CDS

circRNA 5':CCACGUCUUCCCAACA 3'


            ||| ||||| |


target  3':AGUGGU-AAGGGGCGA 5'

 -11.20 2 RIC-seq
chrX:139866031:139866054:[+] chr6:168272911:168272937:[+] nonBSJ supported CDS

circRNA 5': UCCCAACAA--UCCAAGUCUUCCGGA 3'


            |||| ||| ||| ||


target  3':UGGGGAAGAAAAAGGACGAAAAGUCCA 5'

 -9.20 2 RIC-seq
chrX:139866292:139866316:[+] chr6:168363614:168363639:[+] nonBSJ supported Intron

circRNA 5':AUCCU--UGUCUUCCCUCAAAUCCAUA 3'


            |||| || |||||| ||||:|


target  3':GAGGAUGAC-GAAGGGUGCC-AGGUGUA 5'

 -20.80 2 RIC-seq